RNA id: XM_043219000.1


Basic Information

Item Value
RNA id XM_043219000.1
length 4906
RNA type mRNA
GC content 0.46
exon number 13
gene id LOC122324507
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 16017318 ~ 16104727 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGAGAGGAGACACGCGCTTCTGCGCAGCACAGCAGACGGACAGCAGCCCGCCGTCACCGCAACCGTTTACCTTCCTCTGctttgccaaaaaaataaaagtcacaaaGTTTCGGATTGAAACGATAAGGAAATCAATCCtgcttatttgttttaagaaGCGCCGTGCCAGGGTTTCGTTTGCCCCAAACTCTGACAAACTGACAGTTTTGACAGCGCGTGCCCAGATTCAAACCGTGTCTGCTCGCCACCGCCGCCTCGCAGAGGAAAACCGATCTTTTTCGCCGCCAACGCGATTACGCTGCTCAGCAAATAGTGGCAAGAAGTCTGAAACCACATGTGCTCGTCTCCAAGCTGGAGAGACGCGGTTTCGTTTGTCTTCAGAGAGGAAAAGAGTTGGCTTTGAGCCGCGCTGACAGACACAAGGGAAGGAAGGACGGTCTCGTGAGAGAGCTGGAGAAGAGCATCGGAAACCCACGCGGTGCGTAATATTCACGTTTCTTCTCGGCGCTGCTgcaaacagtttaaataaacgAGGGGAAAATGTAGTCTTTGCGGATGGTTATCAGTATAGCCACTTTAGACGCTAACCGTTGCCGGTGAATGGCTCTTTAAACGCGGCGAAGGGGGCGGTAGTTGTGGAGTATACGGCAATGCCAAGTTGAAGGGTCTCGACATTGTCAGTATTAATAAACGCCGAAGTGCACGGCACCGTCTGTTTAACATTTATGGGCTCGTGGATATTTTCTAGACATCCCCTGTTATCAAAAAGTTGAGGGAAATGCTGAATGAAGATGGCGTTTTGACTGGGATATTCACGTAAACCGCAGACGCGAGCGCTGCCAGTCACCTGCTCACAAAGGTAAACGCACCTTTACGCTTAAACGCCGTTCAAAATGATGACCAACGGACCCAACATCGTCTACGAATGGCTGAAAACCCTTCAGCTGTGTCAGTACGTCGAGGCTTTTGTGGATAACGGATACGACGACTTGGAAGTTTGCAAACAAATCGGAGACCCGGACTTGGATGCCATCGGTGTGTTCATTCCGCACCACCGCCAGCGGATTCACGATGCCGTGCAAAGGTTGAGAGATCACGAAAAGGAGACCGCCACCGGGCTTTATTTCACCCTGGAGCCGGTGCCCCCGGTCTCACCTATATACACGAGTCGAATGGTAGAGCAATGCGAGTCTAGGCTGCGGGGCTCCAGGTCATGGACCGAACAGAGCAGCGATAGAGCGGCACGCAGCGTGGGGTACATGGGGGCGTCCAGGAATCTGACGCTGGGGAACCGCAAGGAGCTGGAAGTCTACCCAAAACTGAAGCTGAAGATCATGATCAGGGATAAACTCATTCGGGACGGGATAAACCTTGCCAAGCAGCCATACTCTAATAAGGATGGCTCTCTGGGTAATATAGATGACCTGGCACAAGAGTACTCGGAGTACTACAACACATACTTCAGCGACGTTAGCGATCGAATGGAGGAACTACGTAAGCGACAAGTGTCTCAAGAGCTAGACATGgaaaAAGCAGACACCAGCTTCAACTCTTCACAGCTACGCTCAGACATCCAGGAATCGTTCGGCATCAGCAGTGAGGTGTCCACTCCAGAGACTGAGAGAAAaattcCTCTGCACAAATCCAGCTCTGAAGATGGATCAGGAAAGTGggacaacaagaaaaaaaacaaatccttcTGGCAGAACTTTCGAAAGTCACAGAAAGGGGTCACAAGGCAAACGTCAAAAGGAGAGGACATTGGCTATGTGGCCAGTGAGATCACTATGAGTGATGAAGAACGGATCCAGCTAATGATGATGGTGAAAGAGAAGATGATTACAGTGGAGGAGGCACTGGCACGGTTAAAGGAATATGAGAGGAACAGACAGTTGAGCAGCAGTACAGACACAGCAGAGTGGACTGATGGATCCAGTCCCCCTGTTAACCTCTCCTCCGTCTACAATTCTGTGGAGCAGTCAGATGATGAGCAGGAGGACTCAGTGAAATTCAAGAGGCTTCACAAGCTGGTCAACTCGACTCGACGTGTTCGCAAGAAGCTAATTAAAGTGGATGACAGCAAAAGACATGGCTCACAAGattCACTCAGTCTGGATGCAGCTCCCTTATGTGATGACATAAATGCTCTGTATGCAGAAATCCACAAGAAGCCAGCCCAGTGCACAGACTCTTCTTTGTCCTCTCTTGCCCAAGAGCAGCTCTCTCTGGATGGGGACACGGACAGCCTAACCACCTCGCCTTCCACCAGTAGCCTTGATGCCTGGAAACCTGCTCACAAATTAGTGAAGACCCCCGGCACACATCCCCACGGCCTGATCCGCCCTCCGCGGAAGAGTAGTGCTGGATCTGGACTGGGTGTAGTGGGGGGTAGTGGCTCCTCTTTCTCCGAATTGGAGGGTTTGGGAGACGACAATGCTAAAGTCTCCCGCTCGGCTACAGACGGAGAGATGAGGAAGGCCTTGTCATCTCTATCACATGGGGTAAGTACCGACAGCGTCTACGCTTTTTATGGCCTCACTAGGCCCCGCCCAAAGCCGCACCCCCTTCTGGTGTCTTTAGATGACATTAACAGCACCAAACGGCCACCGGTCTCCGTGTGGCAGCGCAATAAGCCTGACCCAAACTACGCATACTCCACCAAGCACCTGCTCTACCAACGTTCCTGCAACACTCAGAAAACCATCGCTCCCTCTTCCACCTTGCCCCCTTCCCCACCCACCCGTGAGCTTCCACTGGCCAGGGAGAAGGGAAAGAGCTGTGGGAGTGGAGTAGTGGGCAGCTGGCTGTTTCCACCGAGGCGCCTGAAGGGAAGGACAGCGGTTAGTGAGCTCAACATCACCTACGTGGTGGAACGCAGCCTGTATGGCCACTTGAACTGGACTGGGCTGGTTAGGCCCGTCACGCTGAGCAAAGCAGACAGACGTTGGCTCCTAGAAGACGAAAGAGATGCGAACAGGAAGTGGGCATCAAGCATGGATCGTTGCACCAAGCGAGTTCTCTTACGCATCCAGCAGAAGTCTAGAACGTGTAGCTTTGGAGGATTTGACCTGTCTAATCGTTCTCTCCATGTGGTCAACACGACCGAGCCTAGTtCAAGTCCAGATGGAACACCCAGTTGTCCTCAGTCTCCTCAGCCAGACACGGACTCTTTAGAGAAGCCCAAACTCAAGGCAGGAGGGTCTGTAGAGAGTCTGCGCAGTTCCCTCAGTGGGCAGAGCTCCATGAGTGGACAGACGGTGAGCACCACAGACTCATCGGCCAGCaacagagagagtgtgaggAGTGAGGATGGTGATGATGAAGAGCCTCCGTACAGAGGCCCTTTCTGCGGCAGAGCTAGAGTTCACACTGACTTCACACCCAGTCCATATGATACAGACTCACTTAAACTTAAGGTACTGAACACTTACAATTAATCCAActcatttgaaatgattttgtgtttaatattactttaaagtaAGTAAATTTTTTATCACAGTGTGATTTAAAGGTCACACTTCTGAAAAAGCCATCAAAAACTCCAATGACATTGCAGTTGGACCGGATAAAATTCACTACCAGatttctgaatatttagctTCTTCTGAATATCTGAATTTCAATCGCATATGGAAATCAGGAGAAGTATCGGTTCTTTGGAAAGAAGCAACTGTTATACCAGTACCTAAACCAGGAACAATTATTGGCCAATAGCCTTAACCAGCTGCCTATGTAACACCatctaacaaataaaatgtggaTTTAGATGAGGGAAAAGCACATTTGACCATCTTATAAGATTGGAATCTATTGTATGTGACGATTTTATAAAGAAAGAACATGTAGTGGTGTTATTCTTCAGAAAAAGCTTATGGTGCTACATGGAGATAtggtattttaaaagatttataagATATGGGTTTTAGGGGGTATTtacccatttttatttaaaatgttatatctaatgcttttttttgtgttagagATGTATTGAATCAGAATTGCATTTATAAGAATCAGGAGTGCCCCAAGGAAGTGTACTTTCAGtaattcttattaataataaaattacattagcCCATTTGGAATTCATATAAAACCTCAATTGGAgaacacaaacattcatttgaacatttttacatcGACACATCTGTGCCCAATACCTCCCTggaatattaaagaaaacaactaTTAAGATGATCCTGGCCCAGTATAAAAAAAGCAAGTAGTCATCCAGTTGATTATCAGCAGGAATGTTCTGGATATAAGGCACTGCTTGCCAACTCATGTCCCGCTGTATACAAACGGATCAAAGTCAGACAGTCATCTAGCTGCAGCAGTAGTGATTGGTTCAAAAGGCTTTGGCAAGTGCATACCTGGACAAAGTTCAATCTGTAAGAGCTGAatcttttgctttgcttttatcCCTGGAGCAAATAGAAAAGTCTTAAAAATGGATCATCCTACAATAATCCACGTAGTAGAGAAtttaagattgtttttttttttgttggataCCCGGACTTATGAGATTTGCTGGCAatgaacaaaacagcaaaagaaGCACTCCTGTTCAatgaaacaatacaaaataccAGCAATTGACACGAAACCTTTATTGAATCAgtgtgttaataataaatggtaaatggagtggaatgaatgaatacataacAAACTGTATGAGGTAAACCCACTACTGAACCAAGGCATACCTTTTTTATAATTGTGAAACTTGATGTGATCAGGTTGTGTATACAGAAGTCGAATTGGTCATACAAGACTCACTCATTCTTGTCTGTTAAAAGGGGAAGAGAGACCAGTCTGTGAAAGATGTTTTGACTGtaaaacatctattttaattgaatgttcAAGTTTAAGTAATGCTaggcaacttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205130 lncRNA downstream 33663 15992543 ~ 15993096 (-) False LOC122325494
TU205007 lncRNA downstream 315706 15684176 ~ 15711053 (-) True G138862
TU204996 lncRNA downstream 509689 15516843 ~ 15517070 (-) True G138853
TU204970 lncRNA downstream 645790 15370608 ~ 15380969 (-) True G138828
TU204944 lncRNA downstream 679478 15331801 ~ 15347281 (-) True G138811
TU205173 lncRNA upstream 102343 16207070 ~ 16208001 (-) True G138956
TU205179 lncRNA upstream 109617 16214344 ~ 16216716 (-) True G138960
TU205207 lncRNA upstream 218679 16323406 ~ 16325753 (-) True G138983
TU205210 lncRNA upstream 219935 16324662 ~ 16325753 (-) False G138983
TU205285 lncRNA upstream 345799 16450526 ~ 16451893 (-) True G139029
XM_043219006.1 mRNA downstream 25589 15993842 ~ 16001170 (-) True LOC122324513
XM_043220533.1 mRNA downstream 33114 15990149 ~ 15993645 (-) True LOC122325494
XM_043219007.1 mRNA downstream 103902 15919584 ~ 15922857 (-) True LOC122324514
XM_043220492.1 mRNA downstream 181282 15842203 ~ 15845477 (-) True LOC122325442
XM_043220182.1 mRNA downstream 504976 15519210 ~ 15521783 (-) True sox11b
XM_043219004.1 mRNA upstream 8365 16113092 ~ 16118444 (-) True LOC122324509
XM_043220576.1 mRNA upstream 194547 16299274 ~ 16302044 (-) True hebp2
XM_043220577.1 mRNA upstream 194547 16299274 ~ 16302042 (-) False hebp2
XM_043218920.1 mRNA upstream 197464 16302191 ~ 16310567 (-) True kif25
XM_043218621.1 mRNA upstream 206159 16310886 ~ 16314723 (-) True acat2
TU205127 other downstream 33663 15990874 ~ 15993096 (-) False LOC122325494
XR_006247359.1 other downstream 104807 15921733 ~ 15921952 (-) True LOC122325620
XR_006247353.1 other downstream 105758 15920781 ~ 15921001 (-) True LOC122325614
XR_006247357.1 other downstream 106258 15920281 ~ 15920501 (-) True LOC122325618
XR_006247354.1 other downstream 106759 15919780 ~ 15920000 (-) True LOC122325615
TU205229 other upstream 257404 16362131 ~ 16363312 (-) False fndc1
TU205232 other upstream 260083 16364810 ~ 16365467 (-) False fndc1
TU205233 other upstream 260083 16364810 ~ 16366772 (-) False fndc1
TU205287 other upstream 350741 16455468 ~ 16462216 (-) True G139030
TU205714 other upstream 1242079 17346806 ~ 17428071 (-) True erh

Expression Profile