RNA id: TU205179


Basic Information

Item Value
RNA id TU205179
length 2310
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G138960
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 16214344 ~ 16216716 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCTTTGTACTTATTTCACCAAATGTGCTTCTCTTTCATTTTGGTTTATATAAAAAGGCACCAACTAGCGAACTGTCAggccaaaaatacataaatgaaaatctGAGTGTCCTGAATGGATAGCGATCAGAAacgaacaaatgaataaaatacatcatGTGAAGTTAGGCGCTTTATAAAATTTGTgactaaaatttatttttgcctaCTTGCATCCAAGGCCACGTTcgtgtcaaaacatttttagcaataGGGGTTTCAGCGGAAATGTtgctattaaaaacaatttgcaCAAAGTTGTAGAACATGTTTTACCCCATTTCCCAAGAATTAGGATATGGGTACTGTAACACATCGTATGCAAAGCACGCACATGACTAGAAGGGTATCACAAAAGAATCGGGAGGTACATACAGAGGAACGCAAGTTTAATCAAATATACGCTTCAAGACACTCATCCTCGAATGCATACAGATCAGATCACACTAGCAAacgatacaaaaaaaacaaaacacttcttCATGCCTTTATGGTCAGAAATTCACTGGAGTTTCCACTTTAAATATGAAGACAATTTTCAGATCAGTTGCCCTATTGCTTGTTGTCTTTTCCCCAAAAAGCTGTACTCGTAGTACCATGCCAAACGTTACGCTTTTCACTATACAAAGGCCTGAAGTCAGCGttacaaaaagtgaaaaagaaaaatacatggaAAGAACAAACACGGGGACGTTTGTAACCAATCGACTGTACACCTGACGTTAATGTAGTCTTTGGACAGCTTTTGCACGACGATCTCTATGAACACTGAATCATCACAGCTCTCGACGCTCCAACGCACTGCTTTTATTCATGGCGTGAACACAGTGTAACAGCATCTGCATCTGTATATATGGACGATGTCTGATCACAGTCGGATAGCAGTGACCCGTCTTTGACATACATTCATAAACTCGAAACATTTCACTCAACGATACAGCCAGCGACGAATCAGGAAGTGGCTTAGAGCAGATATTTGTGAAGAAAAGAAGTCTGCAAATCCTCAGGAACATCACTGTAATGATCTTCAATGCACTGAACAGTccaataaataacagaaaaaaagttaatcagCAACTCGAATGCAGAGATGCTTGTTATTTCTGCCACAGAGAACGACGAGCAGAAGTTTAAATCAGTTCTTACATGGCTGTTTGTAACTACATGCATAAAGCAACAAAGAAAATGACCAAACTGAAAGGCGAGAATATTTCAAACTACTAGCTGTGCCACATTAAAAGTCAATACTGGCGTGTGCGAAACAAAATcgaaaatacaaaaacaataaacgaACACAAATCTGGGGCTCTGTGGAGGCAGAGAAGCGAACGCCGGAGAGATGGGATAAATGTTATAGGACGTACAGACACGAACATGACCCTACTCTATCAcagagattaataaatattaaacgttTTAGACACAATCCATCCGGTTTAGAAAATGCTGCAAAATCTCCTCGCGTAAAGGCCTCCAGATCCACATTTGCGTCGTTAGAAAAGTCCCTTCCGTTCGTTTGAACTCGCACTCGCCGATGCTCTTCGGTCCTGCGTGCTGATAGGAGGAAAACGTGAGCACAGAAGCACTCCGCTGGCGGATTTACTCAGTGTTGACCTAAATAAGGAAGTACTCCGGGAGAAAGGCGTGTTAGTGTTTGCTCCGCTGTTTATTATCTGAACGCGTCGTTTGAAGGCCGTTTTAATTAGGACACTAATTTATCCCGCACCTCTTTGGATGGCATTAGAAAATGGAGGCCGAAGTTAGAATACCAAGCAGAAAAATCATAGAGTACGTCTTTTAGAGTGCAAAACAGAGGTGCCAAGCATATGGCCCATTCCTCCTGGACTCAAACAGCATGACAGATACACTCATAAACTTTGCATACACAtcgaaaacaaacacacacgcgcacgcacgcacacacacactcatgttaAATCTCTTTGTCCTTCCCCAGTAGTGGACATACCATAAATTTCCTTATATTCGATCTATCTTTCTCTCCATCTATCTCttaacattcacacacacatccctGTCCCACAGTCTTGACTCCAGGCTTATCTGGTGTAGTATACTCTGTAGTAGACGGTTTTAGACCTCCAGAGCGAGTAGGAGTTGTCGAACTTGAGCAAGTATATACCACGGCCGGGATACTGGTGACTCCCAGCGTACACCTCCTCGTGACAGTCCCGCCGGTACACCGGCACTATCTCATCCACCTGCGGTTTCCCAGCCTCTTTCTTGGCTTTTTCCTCCTCAGACTGGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205173 lncRNA downstream 6343 16207070 ~ 16208001 (-) True G138956
TU205116 lncRNA downstream 23685 15816920 ~ 16190659 (-) True G138922
TU205130 lncRNA downstream 221248 15992543 ~ 15993096 (-) False LOC122325494
TU205007 lncRNA downstream 503291 15684176 ~ 15711053 (-) True G138862
TU204996 lncRNA downstream 697274 15516843 ~ 15517070 (-) True G138853
TU205207 lncRNA upstream 106690 16323406 ~ 16325753 (-) True G138983
TU205210 lncRNA upstream 107946 16324662 ~ 16325753 (-) False G138983
TU205285 lncRNA upstream 233810 16450526 ~ 16451893 (-) True G139029
TU205289 lncRNA upstream 238168 16454884 ~ 16455403 (-) True G139032
TU205435 lncRNA upstream 626502 16843218 ~ 16845168 (-) True G139139
XM_043219004.1 mRNA downstream 95900 16113092 ~ 16118444 (-) True LOC122324509
XM_043219000.1 mRNA downstream 109617 16026759 ~ 16104727 (-) False LOC122324507
XM_043218999.1 mRNA downstream 109619 16026762 ~ 16104725 (-) False LOC122324507
XM_043219001.1 mRNA downstream 109621 16026763 ~ 16104723 (-) False LOC122324507
XM_043219002.1 mRNA downstream 109622 16017318 ~ 16104722 (-) True LOC122324507
XM_043220576.1 mRNA upstream 82558 16299274 ~ 16302044 (-) True hebp2
XM_043220577.1 mRNA upstream 82558 16299274 ~ 16302042 (-) False hebp2
XM_043218920.1 mRNA upstream 85475 16302191 ~ 16310567 (-) True kif25
XM_043218621.1 mRNA upstream 94170 16310886 ~ 16314723 (-) True acat2
XM_043219400.1 mRNA upstream 98302 16315018 ~ 16321419 (-) True LOC122324754
TU205141 other downstream 178091 16028253 ~ 16036253 (-) False LOC122324507
TU205127 other downstream 221248 15990874 ~ 15993096 (-) False LOC122325494
XR_006247359.1 other downstream 292392 15921733 ~ 15921952 (-) True LOC122325620
XR_006247353.1 other downstream 293343 15920781 ~ 15921001 (-) True LOC122325614
XR_006247357.1 other downstream 293843 15920281 ~ 15920501 (-) True LOC122325618
TU205229 other upstream 145415 16362131 ~ 16363312 (-) False fndc1
TU205232 other upstream 148094 16364810 ~ 16365467 (-) False fndc1
TU205233 other upstream 148094 16364810 ~ 16366772 (-) False fndc1
TU205287 other upstream 238752 16455468 ~ 16462216 (-) True G139030
TU205714 other upstream 1130090 17346806 ~ 17428071 (-) True erh

Expression Profile