RNA id: XM_043220534.1


Basic Information

Item Value
RNA id XM_043220534.1
length 4185
RNA type mRNA
GC content 0.45
exon number 18
gene id fndc1
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 16347201 ~ 16366799 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGAGTGCATCTGTGTTCCAGAGAACCCTGAATCAGCTCCTTCTGGCCCTCCAGAAAATTTTCAAGTAAAACCACTTCGAGGAAAAGGTACTGCTGTCACAGCCACCTGGGATCCACCTGAGCAAACAAATGGCCGATTAAGGGAATACATCCTTTCCTATGCTCCTGCTATGAAACCTTTTGGTGCAAAGTCAGTTACATACCGCGGCACCATCACCTCTGCTACCATAGATGGACTTACGCCAGGTGACCGCTATATCTTCAAAATTCGTGGAGTCAATAGGAAGGGCCAGGGACCACAGACTAAAGCCATTATTGTTGCAATGCCTGCATCCAGCTCTACTCACTTAAGGAACACAGACAGCCACAAGACAAGTTCCTTAAAGACATCTTCAAACAATGAATCAGACAATCAGGAGCCAGATGAGATGGAAGAGTCCGATACTCAGACCACAACTCAAGTGCCACCCACAAACCGACGAGGACGCCCTCTTTCTCAAACAAGGTCCTATCACAGCATCTTCTCCTCTGTGAGGGGTTCAGTCAGAAATGGAGGTTCTAGCTCAAGGTCAAACTCACATTCATCACCCACTAATGCCAAATATAGAGAGGGAGATACAAATGAGCCAACTGACAGTCCAACAGAAGAGGAAATAAGAGCAAATGAAGCTACTGAGGACACAAAACCAGAGAGCAGCAATAATGCAGCACCACAAACAGAGGAACATTCAAAACACTCTCATGACACACCAAAGAATCAAAACTCCAGTCAGTCTGAATCTGTCAAAAGTCATCCTTGGACCCCAATCACATCCCCAATTATTGATATTAGCAGATTAAGAAGGCCTAATTCTCGATCAAGAATTCGGAGTGAAGCTTCTTCAAGTTCACAAAACCAGGAGTCTGCAGCTACAAGAAAGGACCTAACAGCGGTCTCCTATCCTGAGGAAAAGAACTCATACAACCAGAAAAGTGTCACTGACAGAACTCCTTCAGTGATCTCATCTCAGGAAACCAGGCCTGAATCAGTGAAAGAGTCAGAATCCCCCTCATCCTCATCTATCTCCTCTCCAACTtactcttcctcctcctcagcaTCAacttcatcatcttcttcttcagtATCTTCTCCTTCATCCTCTTTACCTTCATCATCAGCAGGTACAAGAAGGACTTCTTCCACGTCTGGTCGAGTCCCAAGTTCAGCATCTGGTGCCATGTATCCTAACGGAAGAAGAGTTGGAATTTCAACTAAAGCTCAGAGACTTCAAACAGGAAAGCACAAACCTGagtcatcgtcatcatcatcatcatcatcatcatcatcatcatcatcatcctcatcatcatcatcaaatgCTTCTTCACAATCAACACTGCCAATAGGAACTAGGACGAGCATTCACCATACAACagaggagaaaaacacagagctaGACAACACAAAAGGTGAACAACCAACTGAAGAAACCAAAAAAAAAAGCAATAGCTATGTTTCTACTTCCCATTCTTCTTCAAGGACTAACTCTTCTACAACAGGAAGAAGTTCACCGATTTCATTACCAAACCGAAATTCCAGGATAGTTACAGGAAATCGCAGACAAGATGGGAGAATACCATGGAGTAGGGCCGCCTCTTCTGTAGGTGCAGGAAGGCCAATTATTAAAGGATTTCCATCTCGTTCTACTTCTGTGAGCTCTCAAGGTACTAGTGATAAAATCCCCACAACATACCCTTCAAAGCATGAGGCTAATCCTGTGTCAAAACCTAGTGTGCTAAACAAAGACACAAATGCTCCAATAAGTTCCAACAATCCCAGTAATAATGAAGATGTTAAAATTAGCAATGATCATGAAGATGATTATATTTGAGGAAACAGAGCGACCTTGGAGAGGCAAAGCAAAGATGCCACCTCAACTGCTGCACCTAAAACCACAACAACAGCCGTAAGCGAAATTCACAGACCTGGCCAGAAtattgaaaatgaaagtgtgaATAGAAAACAAAGTAGCACCAGTAGCAATTCAAAGTCAATTCCTTCAGGTGCCCAAAGATTGCCTATTTTGGCTTCTAATGGTCGGGTTCGCTCTCCTGTGGTAGCAAGCCGTCTGAAAGGTTCACGGCTCCCTAGTAGTAGGGTGTATCCAGTATCCAGTACACGGCACATAAGAATAGGATCTGTTCCCACATCAGGCTCTTCACCGTCTTCAACACACTCCTCATCAacatcatcatcttcctcctctCAAAACAGTCCAGCAGAAACACCACTTATCTCAAATTCAGACATAGCAGACAGGAGTAATACTAATGCTAGGTTAAATCCAAGTTCAGTTTCTCGCTCTTCCCATGGGCTGTCAGCTGGTGAAAGCTCTAGTAGGAATACATCTCCTGAGTCTCGAAATCCAGTGATGGGATCGAGATTGCGGTCAATTTCAAAGGACAACACTCCAGCTAGTGGCTACAAACCTAGCTATGAAAAAGGCAAAAACGGACGGCCAAATCTCACAGCTGCAAATAGCAAAGCATCCTCAACATCTGATGAAAATTCAACACCAAATGGAGTCCGACATATCACAGGTCCTGATGGAACAAAATGGGTGTTAGATCTTGATAAGGGTGTCCTAATGAATGAAAACGGCAGAGTTCTTCAGGATTCAAGAGGAAGACCCAGAAAAGTTGTCCTTGGAGAGGATGGCAAGACTATATTAGATGATCAGGGCAGCCCACTGGTAAACCAGGAAGGATTAGCATTATTTGGTCATGGAAGAGACAGTCGGCCTGTGGTTAATCCTAGTGACAAATACCTTACTGTGGGAGGAAAACCCATCATTGGCTTGGACCGCCCTAAACCAAGGATTACAACCACGACTACAACAACCACTACAATCGAAACTACAACAACACCAGAACCTACTACAACAGAATTGGTAACAGAAACATTGGAGCAGTCAACATTAGCGGCTGAGCCTACATGTCCACCTGGACTTTATTCTCGACTGGATCAGAATGGTTTCCCAGTATTGGATGCTGATGGAATACTTAACTGCTACTCTGAAGATACTCTTTTTGAGGAGACTACCACAACCCCAGTTCCACTTCCTACCACAACGCTGGCTCACACAACAGAGACTCCTACAACACAGCCTCTAACTCCTGAGACACGGCCTTTGAACAACACTCCTTCTTCTGAGTTTGATGTGGCCGGAAAGAAACGGTTCACAGCTCCATATGTAAACTACATCCGTAAGGATCCTGGAGCTCCCTGCTCCCTGACCGAGGCTCTGGAGTACCTTCAAGTAGATGTCTTAGCAGACTTGATGGAGAAGGAACAGCAATCAGTCAATCAAAAGCAGCCACCCAAAAACAAGCCTCATAATGTCACTGTGGTTGCTATGGAGGGCTGTCACTCCTTTGTGATTTTGGACTGGGCACTTCCACTGAAAGATGACATGGTGtctgGCTATATGGTACACAGCGCGTCCTATGACGATGTCCTAAATAACAGATGGTCAACCAGATCCTCAAGTGGAACCCACCTCCCTGTTGAAAATCTCAAGCCCAATTCCAGGTATTACTTCAAAGTTCAAGCAAAGAATATCTTTGGACTGGGGCCACTGAGTGAAACTTTAACATACGTTACAGAATCAGatgatcCCCTGCTCATAGAGAGACCCCCAGGTGGGGAGCCCATCTGGATCCCATTCTCGTTCAGGTATAACACCGCCCACAGTTCTTGTAAAGGAAGTCAGTTTGTCAAGCGCACCTGGTATAGGAAGTTTGTCGGCGTCGTCCTCTGCAACTCGCTACGCTATAAAATCTTCATGGGAGATGGACTGAGAGAGCCGTTCTACAGCGTTGCTGATACATTTGGCCACGGAGAGGACCACTGCCAGTTTGTGGACTCTTATCTAGATGGAAGGACAGGACCACACAATCTCTCCCTCAGCCTACCCACAGCTCAAGGATATTATCGGTCATATAGGCAAGAGCCGGTGAATTTCGGTGCCATCGGAAGGCGCACACCACATCCTTTCGTTGGCTGGTATGAATGTGGAGTTCCAATCCCTGGAAAGTGGTAACAGGGGGGAAACTCCAAGAGGACATTTCCACAGGCAATTACATTCCACGTGTTCTGTCCCTGTATCTATAAGCCAATCACAGAGGTGAACCATTGTTCACCA

Function

GO: NA

KEGG:

id description
K24484 FNDC1; fibronectin type III domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205207 lncRNA downstream 21448 16323406 ~ 16325753 (-) True G138983
TU205210 lncRNA downstream 21448 16324662 ~ 16325753 (-) False G138983
TU205179 lncRNA downstream 130485 16214344 ~ 16216716 (-) True G138960
TU205173 lncRNA downstream 139200 16207070 ~ 16208001 (-) True G138956
TU205116 lncRNA downstream 156542 15816920 ~ 16190659 (-) True G138922
TU205285 lncRNA upstream 83727 16450526 ~ 16451893 (-) True G139029
TU205289 lncRNA upstream 88085 16454884 ~ 16455403 (-) True G139032
TU205435 lncRNA upstream 476419 16843218 ~ 16845168 (-) True G139139
TU205444 lncRNA upstream 483755 16850554 ~ 16946540 (-) True G139145
TU205448 lncRNA upstream 492544 16859343 ~ 16860256 (-) True G139147
XM_043219400.1 mRNA downstream 25782 16315018 ~ 16321419 (-) True LOC122324754
XM_043218621.1 mRNA downstream 32478 16310886 ~ 16314723 (-) True acat2
XM_043218920.1 mRNA downstream 36634 16302191 ~ 16310567 (-) True kif25
XM_043220576.1 mRNA downstream 45157 16299274 ~ 16302044 (-) True hebp2
XM_043220577.1 mRNA downstream 45159 16299274 ~ 16302042 (-) False hebp2
XM_043219398.1 mRNA upstream 68422 16435221 ~ 16443831 (-) True hpcal1
XM_043219399.1 mRNA upstream 68422 16435221 ~ 16443829 (-) False hpcal1
XM_043219918.1 mRNA upstream 108552 16475351 ~ 16519770 (-) False usta
XM_043219917.1 mRNA upstream 111805 16478604 ~ 16519764 (-) True usta
XM_043219908.1 mRNA upstream 153644 16520443 ~ 16690139 (-) False sash1a
TU205141 other downstream 310948 16028253 ~ 16036253 (-) False LOC122324507
TU205127 other downstream 354105 15990874 ~ 15993096 (-) False LOC122325494
XR_006247359.1 other downstream 425249 15921733 ~ 15921952 (-) True LOC122325620
XR_006247353.1 other downstream 426200 15920781 ~ 15921001 (-) True LOC122325614
XR_006247357.1 other downstream 426700 15920281 ~ 15920501 (-) True LOC122325618
TU205287 other upstream 88669 16455468 ~ 16462216 (-) True G139030
TU205714 other upstream 980007 17346806 ~ 17428071 (-) True erh
TU205713 other upstream 1059069 17425868 ~ 17428071 (-) False erh
XR_006247229.1 other upstream 1443475 17810274 ~ 17824201 (-) False swt1
XR_006247304.1 other upstream 1976673 18343472 ~ 18350122 (-) True adgrf3b

Expression Profile