RNA id: TU205289


Basic Information

Item Value
RNA id TU205289
length 411
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G139032
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 16454884 ~ 16455403 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATGAATGTATGGGATTGGGAAatcaatgatttattttgaatttaccTCGACTGACTGGATTAAGAAATCACGGATCTTCATATCAGATGTACCAATCTTCTGATCAAGCAGGTCACTGACTGTGGCTTTGATGGCATCCATCGGAATAATTTTGTGAATCTCGGTGCTGACATCAGAACTGACCTCAGCCTCCATCTCCTgtaccatatttcaaaatgactttCTGAAGAGAGAAAGTTTTCTCTGGGAGCCTAAGGTCACTTTCAAGCTCTACTGTAAGACCCTCAGCATGTTTCAGTTGTGCAGTTACTTTAGCATCGGTCTGAAAATGAGGAATGAGCAGCTGAACCTGCAGCATGGCATCCTTTATTGACTCTGTCCTAAAGAAGAAAGAGAGTAGTAAACCCATT

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0051246 regulation of protein metabolic process biological_process
GO:0061134 peptidase regulator activity molecular_function
GO:0061135 endopeptidase regulator activity molecular_function
GO:0030414 peptidase inhibitor activity molecular_function
GO:0004866 endopeptidase inhibitor activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205285 lncRNA downstream 2991 16450526 ~ 16451893 (-) True G139029
TU205207 lncRNA downstream 129131 16323406 ~ 16325753 (-) True G138983
TU205210 lncRNA downstream 129131 16324662 ~ 16325753 (-) False G138983
TU205179 lncRNA downstream 238168 16214344 ~ 16216716 (-) True G138960
TU205173 lncRNA downstream 246883 16207070 ~ 16208001 (-) True G138956
TU205435 lncRNA upstream 387815 16843218 ~ 16845168 (-) True G139139
TU205444 lncRNA upstream 395151 16850554 ~ 16946540 (-) True G139145
TU205448 lncRNA upstream 403940 16859343 ~ 16860256 (-) True G139147
TU205451 lncRNA upstream 404923 16860326 ~ 16896383 (-) True G139149
TU205449 lncRNA upstream 434536 16889939 ~ 16891460 (-) True G139148
XM_043219398.1 mRNA downstream 11053 16435221 ~ 16443831 (-) True hpcal1
XM_043219399.1 mRNA downstream 11055 16435221 ~ 16443829 (-) False hpcal1
XM_043220534.1 mRNA downstream 88085 16347201 ~ 16366799 (-) True fndc1
XM_043219400.1 mRNA downstream 133465 16315018 ~ 16321419 (-) True LOC122324754
XM_043218621.1 mRNA downstream 140161 16310886 ~ 16314723 (-) True acat2
XM_043219918.1 mRNA upstream 19948 16475351 ~ 16519770 (-) False usta
XM_043219917.1 mRNA upstream 23201 16478604 ~ 16519764 (-) True usta
XM_043219908.1 mRNA upstream 65040 16520443 ~ 16690139 (-) False sash1a
XM_043219907.1 mRNA upstream 65040 16520443 ~ 16690138 (-) False sash1a
XM_043219905.1 mRNA upstream 65040 16520443 ~ 16690138 (-) True sash1a
TU205233 other downstream 88112 16364810 ~ 16366772 (-) False fndc1
TU205232 other downstream 89417 16364810 ~ 16365467 (-) False fndc1
TU205229 other downstream 91572 16362131 ~ 16363312 (-) False fndc1
TU205141 other downstream 418631 16028253 ~ 16036253 (-) False LOC122324507
TU205127 other downstream 461788 15990874 ~ 15993096 (-) False LOC122325494
TU205287 other upstream 65 16455468 ~ 16462216 (-) True G139030
TU205714 other upstream 891403 17346806 ~ 17428071 (-) True erh
TU205713 other upstream 970465 17425868 ~ 17428071 (-) False erh
XR_006247229.1 other upstream 1354871 17810274 ~ 17824201 (-) False swt1
XR_006247304.1 other upstream 1888069 18343472 ~ 18350122 (-) True adgrf3b

Expression Profile