RNA id: TU205702



Basic Information


Item Value
RNA id TU205702
length 314
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G139317
representative True

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 17336007 ~ 17336320 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GAACGCCACGACGGTGAATCAATGATGGTTGAATTTTCAGATTGTCTCTTTAAGAGGAGTAGAGTTTAGTTTGACGTCTGAAATGTGCTTTGGTGGGATTTTGTCATTTGCTTTATTCAGAATATGAACGCATTTGCGGGCTATAAGCGTTCAAAGAGGATGGAGCGTGTTGTGAATGGATCAGAGCGACTCAGCAGCATCTCATTGTTCAGGTCAGTGAGGTAACGGACGAGCCGCATAACATCATCGGCGTCGACTCACTTCTGCCGCCGTGTGGACACGAGCTGAACACTCCTAGCGCCTTCtgtgtttac

Function


GO:

id name namespace
GO:0008188 neuropeptide receptor activity molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU205687 lncRNA downstream 210097 17125437 ~ 17125910 (-) True G139302
TU205686 lncRNA downstream 210759 17124823 ~ 17125248 (-) True G139301
TU205685 lncRNA downstream 211748 17123886 ~ 17124259 (-) True G139300
XR_006247281.1 lncRNA downstream 219061 17043647 ~ 17116946 (-) True LOC122325296
TU205451 lncRNA downstream 439624 16860326 ~ 16896383 (-) True G139149
TU205717 lncRNA upstream 58544 17394864 ~ 17395998 (-) True G139323
XR_006247186.1 lncRNA upstream 60022 17396342 ~ 17409495 (-) False LOC122324490
XR_006247185.1 lncRNA upstream 61108 17397428 ~ 17409495 (-) True LOC122324490
XR_006247201.1 lncRNA upstream 219535 17555855 ~ 17559470 (-) False LOC122324574
XR_006247200.1 lncRNA upstream 219535 17555855 ~ 17559470 (-) False LOC122324574
XM_043219622.1 mRNA downstream 49115 17152343 ~ 17286892 (-) True nbas
XM_043219623.1 mRNA downstream 49121 17152343 ~ 17286886 (-) False nbas
XM_043218838.1 mRNA downstream 344204 16984344 ~ 16991803 (-) True nr2e1
XM_043219290.1 mRNA downstream 365966 16949429 ~ 16970041 (-) False afg1lb
XM_043219289.1 mRNA downstream 365966 16949429 ~ 16970041 (-) False afg1lb
XM_043219275.1 mRNA upstream 78147 17414467 ~ 17424811 (-) True smek1
XM_043219276.1 mRNA upstream 78447 17414767 ~ 17424810 (-) False smek1
XM_043220607.1 mRNA upstream 90022 17426342 ~ 17428123 (-) False erh
XM_043220568.1 mRNA upstream 92186 17428506 ~ 17440011 (-) False paplnb
XM_043220567.1 mRNA upstream 92186 17428506 ~ 17439977 (-) False paplnb
TU205287 other downstream 873791 16455468 ~ 16462216 (-) True G139030
TU205233 other downstream 969235 16364810 ~ 16366772 (-) False fndc1
TU205232 other downstream 970540 16364810 ~ 16365467 (-) False fndc1
TU205229 other downstream 972695 16362131 ~ 16363312 (-) False fndc1
TU205141 other downstream 1299754 16028253 ~ 16036253 (-) False LOC122324507
TU205714 other upstream 10486 17346806 ~ 17428071 (-) True erh
TU205713 other upstream 89548 17425868 ~ 17428071 (-) False erh
XR_006247229.1 other upstream 473954 17810274 ~ 17824201 (-) False swt1
XR_006247304.1 other upstream 1007152 18343472 ~ 18350122 (-) True adgrf3b
TU206351 other upstream 1069707 18406027 ~ 18446949 (-) False G139706

Expression Profile