RNA id: TU205818


Basic Information

Item Value
RNA id TU205818
length 552
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G139386
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 17615148 ~ 17615699 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACAAGCTGACCGCCACACTCCTGAAGTGCTGATTGAAAGACCAGGACTCTGGCAGCTACATCCACATCCACTACACTGCAGCCCccaagagaaaagagagagggcTCAAGCAGCTGGCCGGTGCCAAAGAAGTCCTGCTTCACTTCCACATGCACCCCATTTTCCCAACACTGGACCGCTACACTGTTTGAAGGTTTAGGCTGCTGCAACTCAAAGTTAGAAGCCGGCTGTACTGGCTCTTCTGGGACTTTCGGGAACTTCCAGCTCAGCTCCTTGACAGGGACCTGCAATTCTTGTTTGGACTGAATACTAGAAGCTGCAAGATTTGGAGTAAGCGGTGCCAGCTGAGGCCTCTGAGGCTGAACCCCATATGGAGCTTGGATCGGTTTCCACGTCTCCCTAAGCtgagaatcattttttttagattcGTCATGCGTCAGAACCCAGGGCTGAAACCCCCAAGCCTTTTGTGCGGCACAATACACATGATCAAACGTGATCAACACTAAAAGCACAAGAACACCTTGCCCAAGTCCCATTATTACAGCCAA

Function

GO:

id name namespace
GO:0008406 gonad development biological_process
GO:0045137 development of primary sexual characteristics biological_process
GO:0007548 sex differentiation biological_process
GO:0061458 reproductive system development biological_process
GO:0048608 reproductive structure development biological_process
GO:0061134 peptidase regulator activity molecular_function
GO:0061135 endopeptidase regulator activity molecular_function
GO:0030414 peptidase inhibitor activity molecular_function
GO:0004866 endopeptidase inhibitor activity molecular_function
GO:0030234 enzyme regulator activity molecular_function

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247201.1 lncRNA downstream 55678 17555855 ~ 17559470 (-) False LOC122324574
XR_006247200.1 lncRNA downstream 55678 17555855 ~ 17559470 (-) False LOC122324574
XR_006247199.1 lncRNA downstream 55678 17555855 ~ 17559470 (-) True LOC122324574
XR_006247186.1 lncRNA downstream 205653 17396342 ~ 17409495 (-) False LOC122324490
XR_006247185.1 lncRNA downstream 205653 17397428 ~ 17409495 (-) True LOC122324490
TU205819 lncRNA upstream 94 17615793 ~ 17616508 (-) True G139387
TU206133 lncRNA upstream 173499 17789198 ~ 17794072 (-) True G139565
TU206135 lncRNA upstream 179785 17795484 ~ 17799866 (-) False G139567
TU206136 lncRNA upstream 179785 17795484 ~ 17799866 (-) False G139567
TU206137 lncRNA upstream 179785 17795484 ~ 17799866 (-) False G139567
XM_043219097.1 mRNA downstream 6203 17603658 ~ 17608945 (-) True LOC122324568
XM_043219095.1 mRNA downstream 6203 17603658 ~ 17608945 (-) False LOC122324568
XM_043219096.1 mRNA downstream 6203 17603658 ~ 17608945 (-) False LOC122324568
XM_043219105.1 mRNA downstream 12723 17597393 ~ 17602425 (-) True LOC122324572
XM_043219098.1 mRNA downstream 19162 17586384 ~ 17595986 (-) True LOC122324570
XM_043219323.1 mRNA upstream 13732 17629431 ~ 17635856 (-) True scyl3
XM_043218994.1 mRNA upstream 29279 17644978 ~ 17662064 (-) True tprb
XM_043220197.1 mRNA upstream 47803 17663502 ~ 17666366 (-) True pdcb
XM_043220196.1 mRNA upstream 63504 17679203 ~ 17682955 (-) True ptgs2b
XM_043220343.1 mRNA upstream 89219 17704918 ~ 17772741 (-) True hmcn1
TU205714 other downstream 187077 17346806 ~ 17428071 (-) True erh
TU205713 other downstream 187077 17425868 ~ 17428071 (-) False erh
TU205287 other downstream 1152932 16455468 ~ 16462216 (-) True G139030
TU205233 other downstream 1248376 16364810 ~ 16366772 (-) False fndc1
TU205232 other downstream 1249681 16364810 ~ 16365467 (-) False fndc1
XR_006247229.1 other upstream 194575 17810274 ~ 17824201 (-) False swt1
XR_006247304.1 other upstream 727773 18343472 ~ 18350122 (-) True adgrf3b
TU206351 other upstream 790328 18406027 ~ 18446949 (-) False G139706
TU206365 other upstream 791055 18406754 ~ 18442292 (-) True G139706
unassigned_transcript_2507 other upstream 1460347 19076046 ~ 19076118 (-) True trnaf-gaa_119

Expression Profile