RNA id: XM_043219503.1


Basic Information

Item Value
RNA id XM_043219503.1
length 4992
RNA type mRNA
GC content 0.42
exon number 18
gene id swt1
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 17801402 ~ 17824201 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TACGCAAAGTAAAAAGATAGCGGAAGTGAATTCAACCAGCAGAAGGTAATGCCAAAGGAGACGTGAAGAGCTGTTAATGCATCAGAAATTTCTTTACTTTGTTAAATAGCGTCGTCTTTAACAACGTTCCTCCTGCTCGTGGTAAAGGGTTCTGAAGATGTCAAGCAAGAAATCAAAGAGGAAGAAACATAAAAAGGAGGAAAGAAGCCCATCAAACTCTTCTCGTGACAGTAAGAAGGACAGTGATGCTAAAATATTCAGCAGtccaaaaagaaaacacaaacatcatcATCGGCATGCAAGTTCTGATAAAGATAGAGCTAAAGAAAGGAGGGCGACTGACTCAAAATCAACAACAGAATTTGAAGGAGGATTTAAGAAAGCAAAAATCCGAGACAGCAAGAGGAGGGAAGAAAGATCCCTAGAAAGCCAAACTTCAAAGAATTCCAGGCCAGTTTTCAAGTCACCTGTCACACACGATAAGAAGCAAGTGAATCCCAGAGAGAAGCATGAAAAAGCAAGTGCCCATATCTCAGAGAGAAGCTCCAGCAGTCACGCTGCAACAAACCTGCCTTCTTCAAAAGAATTTGAGAAAAAGAGACAGGAGCTGGTATCGAGGAGATCCACAGCAGAGCGTCCCAGATGGATACCTCCAAAGGATTATTGTTCCCCTGcacgagagaaaaaaagaggacTCATGAAAAGGCCTTTGTCACCAGAGCTTGATGTTGAATCCAAACGGAGAGACATCAAAAACATGACCAATGCTTCACATGCAGAATCTCATTCTGAAGTTCAAAAGGGAACAAGAAAGATGTTGGTGGCCAACAGTTCCAAGAATATCGACTATAATGTTGGTGCACAGAGTTCTCAAGGCAAGTCCAAAGAAGCTATGCCAGTAGTGAAACATGGATCTAAACTGAAGTTACAAGAAGATATTTCACCTAAGAAGCAAGACCATGTACAGCTGGGTAGTGTCCCTGGTGAAATCTCAGGAGAAAAAAGGCCATCACTTGGTGGTCTCACAGCAAGTGTCAGTTTCAAGATCCCAAAGAAGGTCAATGCTGTGAAAGTTTGGACAAACACGGGTGTGTGTAATGTGAATTCTTCAGATCGCAGGACTCAAAGTGCTGCTCAGCCTTCTTTGCCATCTAAAATCAAATTTCTCATCTCACAGCCGCAAGGACAGAGATTTCAAAGGTTTTCTGCGCAAACCTCTCATAAACCCTCTTCTATTAACCCGTCACATATTTCATCTATATCTCACCAAGTTCAGCAGACACTCTCTGACAAAACAAGAGAGGTCACAATGCCAAGCAATACTTCCTGCACAGTACAACATGTAACTCTCCAGAAAACTGCAGAGACCCTTGACTGTGACCATGAGATGGAGCTGGTGGAGGAGCTTCATCTGGCACGCTCTGAGAGGCGCCTGGAGGTGAACTTGATAGAGAACTGTGGAGAGCTCACCTGCATGGACATTGACCCTCCAGAAGAGGGTGCCAGCACAGTGCTAAGTAAAGATCAACATAAACAGGCGCTGCTTATTGTTCTGGATACCAATGTGCTGCTCAGCCACCTGGAGTTTGTGAAGAAGATCAGGTCACATGGTCTCGGtgGGCTTGGGTTCCCCACGTTGCTGATCCCATGGGTGGTGCTGCAGGAGttggattatttaaagagtgGTAAACTCTCCAGCAAAGTGGAATACAAAGCCAGGCCGGCTGTCCACTACATTTATAGTTGCCTAAAAAATCAAGAACCTAGACTTGTGGGCCAGTCAATGCAGCAGGCCTCTCAAGCTGTTGGTGGGCCTGGTGTTGTGAACAATGATGACAGAGTACTGGAGTGCTGTCTGCAGTACCAGGCTCTGTGTCCAGAGGGAGCACTAGTTCTTTGCACcgaTGATAAGAACTTGTGCAGCAAGGCTCTGCTCAGTGGGGTGAAGGCCTTGAGTAAAGCAGACTTGGTAAAAGAAGTGGATGGAAACAGATCTACAATTCTAAAGTACATTCACGCTCAACCCGCTGTGCGGCCCCCAGCTGAACCTGTAGAGAAAGCAGAAGAGAAAGAATCACACAAGAATAAATGCAGTGATCCAGTGGAGGAACGACAGCTGAGCGAATGTGCGTGTTTATTGGAGTCCTGCCTCCAGGGGGCGCTGTCAGAGGTGTTGGAGGAAGAGATGAAAGCTGCTTATGGAGAACTGTGGACTGAGATAGTGTATGTGAAGCCCCCGTGGACTCTGGATGGGCTGCTCAAGTGTTTCAAGAAGCACTGGATAGCTGTGTTTGGAAGCATTATTAAGAGGAGCTTGCTCAGCTGTGTGGAGATGCTGAGTGACACTCTATGCTCAGACAGGTCCATAGAGCACAGGTCTGTTCTCAGTGCTGTGAGATTGGCTGAAGAGCTGCTGTCGGCACTGGCTGGAAGATCTTTGTACAACGGTCATGTAGCTCAGGCACTCTCTACCCTTCATATGCTAAAGCAAAGACTACAGtctCCGAAAGCTCCAGCAGAGGGTAATGGCACTGATAATGAGGACTCGCTGATGGCAGAAATAGAGGAGGATGTAGCTCCACCACCTCAGACATCACATCAGGATGTTTGGGCATTATTTGAGAGCATCTGGAACAACGTGTGTCAGATTAGTTCGGCTTTGTTCTCAGCGCTCCACTACACTCCAGGAGCCACGGAGCCCAGCCAGCGATCTACCTCACCCCCGCCTCAGGAAGCTCTCTCCTGTCTACAAAGGCTCTCCACTGCACTGAAACAGCTACTGGAGGCTCTTCAGAGGCTGTTATCAGCGGAAAGCAGTGTTCAAGATGCACAGTCACTTCTCGCCTTTATTCAGACCAGCGAGATTGCCGCTATGGAGCCACGTTTCACTGCCAGGGACCTGTTTGATTGCGTGTCTCAGCAGGAATACCGGTGCTGAATCTCACACCGGGGATTGATATCTAAGCAACCAGGCACGGCTCTGATCGTGACGGCTGAGACGCTGCTGCAGCGTTTGTCTGATATTCAGTGTtgcgtgtttgtttttgagCGAGCTCCGTCACTGCGGTGTTATGTTctattttgttgttgatttgttAAAGACTGGCTTCATAAAGCTTTCACTCTGCTCTCTGTTGGCTTTCTCCCTGCTGAAGGGGAGCTGCCCACATGTTATACGGTTGCCATGGCAGCACTGTTGTCAAGCGGATAATTGCAAGGCTGAAGGAACGGAGTGCTTTATTTGTTCACCACAGACCACATCCCATAATCTTTAGCGGAcaagttttttatttgtttgggaGAAAACAGGCTTATATCCTATAAATAGGTTAAATAACTTTATACTAttgctcaaaagtttgggatcagaagatcttttagttttttaagaaataactaaaatttaagaaattactgttttattactatttctgtttattattattgcattcagcaaggatgcatgtGATTTGTGAACTTTTTATGCATGAAaggaaatattacatataaatcagcatattagatcatttctgaagggagtaaaaaataaagtaaaatggtgaaatattattaaaagtaaatgcagcacaatattttttttctcaaaaacattattagcaTAGTGCGTGGTGGTTATAATAAGTTATTAGAGATACACTGatgataattttatatttatggtcAATGTTATATTATTCTATGTTGTCTGAATAAATAATCGTTAAACGCTAAAGccataataaatcattttcaatgCTATGTCAGATCGTAATGTacatgtatgaaaaaaaaagaaattctataTTCTTTTCATGTAGATTACATTTGACAATGTATCTTCAGAACATTCAAAATACAGGATGTATTTTCAGACAGAACTGTAACTGCTTTTAAATGAGCGAAGACAGCATTCCTATCTTGACCTGGTCTTTATTTCCACCATACCCTTCATTATATAAAGCGGCTCAGAGAGGGTTTGCGCTGGAGAAAGACAAGTGCATgcattctttctctttttttttggtagttATGTAACATCCATTGGGAAACACAATGTGAACAAAATAAGGCAACAAGCAGCAGCAGGTTGcaaaaaagagagggaggagagataAAGTAACACAATAATGGCTTTCATTCAAGTCAGTTGTGAACCACTGTGccagggaagagagagagagagagagagagatttctgCAATTGTTTAAATGCCTTTCCTTTCCCATGAACACTAAGTCAGTAAAGTATTTCCTGTAGATATATAAAGCACCCTATCTTTGAGTGCGATAGCCTTGTGTCAAAAGTGGCgtgaattgcattttttactTTCCCTAGGTGCGTTTACAATTTTCTGTAGGATCAAAATAAATGGTAATCATAATTACCATTTTCTGTCTAGATTTTAGCCCTCtgatttaatttcactttaatttcagttaattacAGAACCCCTATAATTAGCAATAAGACACTGCAGCATTgattattatagtaaaaaaactaattataaatatttgaggTGTCCTTTGCAAAGTCCTTTCTTCAGCCACCTTCTCTTGACCCCTTTCACTTCCTGCATACGAGACATCAACTTCCTTTTTGGAACCGTGTAGTCGTGTAGCGGAAATTATCCTGTGTGAAGTGAAACAGCAGGGACATTCAGGGACACTCAGAGCTGTTTAGGTAGATCAGATCCTCATCACTTGATCCGTTTGCAACCTTCTTGCAATCTTCTTCCATTTCTGTTAAATTGGTTTTCCAATTTAACTCATTTTCACATCCTCATAATCCACATCCACATTTTTTATCCTTGTATTTACTTACTATTTTGTCagtaataagtaaataatttagtaataataatagaataatttacttttttgtgtgtagaaaaaaatacagaattttaaattgaaagttGCAATTGCCTTTTGTGACAGAAATAAGCTTCGTGGTAGAGACGtcttatatgtgtgtgtgtgtgtgtgtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206130 lncRNA downstream 3933 17801402 ~ 17802196 (-) False swt1
TU206135 lncRNA downstream 6263 17795484 ~ 17799866 (-) False G139567
TU206183 lncRNA upstream 64367 17888568 ~ 18180187 (-) False G139590
XR_006247178.1 lncRNA upstream 69535 17893736 ~ 17907615 (-) True LOC122324448
TU206190 lncRNA upstream 69801 17894002 ~ 17898622 (-) False LOC122324448
TU206185 lncRNA upstream 263011 18087212 ~ 18107403 (-) True G139591
TU206184 lncRNA upstream 283343 18107544 ~ 18180187 (-) True G139590
XM_043220343.1 mRNA downstream 33388 17704918 ~ 17772741 (-) True hmcn1
XM_043220196.1 mRNA downstream 123174 17679203 ~ 17682955 (-) True ptgs2b
XM_043220197.1 mRNA downstream 139763 17663502 ~ 17666366 (-) True pdcb
XM_043218994.1 mRNA downstream 144065 17644978 ~ 17662064 (-) True tprb
XM_043219323.1 mRNA downstream 170273 17629431 ~ 17635856 (-) True scyl3
XM_043220059.1 mRNA upstream 19338 17843539 ~ 17861031 (-) True kifap3a
XM_043218850.1 mRNA upstream 142895 17967096 ~ 17975299 (-) True slc25a24
XM_043220232.1 mRNA upstream 165111 17989312 ~ 17995262 (-) True si:ch211-63o20.7
XM_043220602.1 mRNA upstream 183745 18007946 ~ 18013527 (-) False znf395b
XM_043220604.1 mRNA upstream 183745 18007946 ~ 18013451 (-) False znf395b
TU205714 other downstream 378058 17346806 ~ 17428071 (-) True erh
TU205713 other downstream 378058 17425868 ~ 17428071 (-) False erh
TU205287 other downstream 1343913 16455468 ~ 16462216 (-) True G139030
TU205233 other downstream 1439357 16364810 ~ 16366772 (-) False fndc1
TU205232 other downstream 1440662 16364810 ~ 16365467 (-) False fndc1
XR_006247304.1 other upstream 519271 18343472 ~ 18350122 (-) True adgrf3b
TU206351 other upstream 581826 18406027 ~ 18446949 (-) False G139706
TU206365 other upstream 582553 18406754 ~ 18442292 (-) True G139706
unassigned_transcript_2507 other upstream 1251845 19076046 ~ 19076118 (-) True trnaf-gaa_119
TU206720 other upstream 1430609 19254810 ~ 19256255 (-) False batf3

Expression Profile