RNA id: TU206133


Basic Information

Item Value
RNA id TU206133
length 588
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G139565
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 17789198 ~ 17794072 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACATAACAGTCAGCCTCATGTATAAGTCATGCGCTTACCTAATACCGAATGACGTACGTCTGGGAGAGATAGTTTACTTGGGAAAGCCGTAAAAAGGCACGAGTGAAGTAGAACCAGGAATGGGAGTGCCTAGGTCTTCCTTCACTACAATGTGGATGGAAAAGGCAATGCCAGGTAACCAGTGGACACGGCAGGGGGTCAGAGGTGACTCAAACTCTCAGGCTTAGAGTGACTGCAATCAAGTCCTCGCGTGTCCCGTTGGCTATAGACTCAAACCTTTTCTGTGTTGATCGTGCATTAACCTGATCTGTTTGACGGTAGACGATAGTAGACATATTTAAGGTCAATTCAGAGCTGTTGGTTGTGGATTGCAAAAGCAACAGATATGGCACGTTTCTGCGACCGTACAACCCCGTCGTTCCGGATTTCCAGACTGTTAGATCGGCGAGCGAGCTTTGACAGCGAAGCGGGAGCACGCGCTTAACAAAAAGCCACGGGGCTGAATCGCGCGTGACGTAAAGCTAGAGCTCCGCCTGCGGAAAAGTACCAACCGACTGAGACGAGGACGGGCCCCGGAGTCAAGGGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205819 lncRNA downstream 172690 17615793 ~ 17616508 (-) True G139387
TU205818 lncRNA downstream 173499 17615148 ~ 17615699 (-) True G139386
XR_006247201.1 lncRNA downstream 229728 17555855 ~ 17559470 (-) False LOC122324574
XR_006247200.1 lncRNA downstream 229728 17555855 ~ 17559470 (-) False LOC122324574
XR_006247199.1 lncRNA downstream 229728 17555855 ~ 17559470 (-) True LOC122324574
TU206135 lncRNA upstream 1412 17795484 ~ 17799866 (-) False G139567
TU206136 lncRNA upstream 1412 17795484 ~ 17799866 (-) False G139567
TU206137 lncRNA upstream 1412 17795484 ~ 17799866 (-) False G139567
TU206138 lncRNA upstream 1412 17795484 ~ 17799866 (-) True G139567
TU206139 lncRNA upstream 1412 17795484 ~ 17799866 (-) False G139567
XM_043220343.1 mRNA downstream 16457 17704918 ~ 17772741 (-) True hmcn1
XM_043220196.1 mRNA downstream 106243 17679203 ~ 17682955 (-) True ptgs2b
XM_043220197.1 mRNA downstream 122832 17663502 ~ 17666366 (-) True pdcb
XM_043218994.1 mRNA downstream 127134 17644978 ~ 17662064 (-) True tprb
XM_043219323.1 mRNA downstream 153342 17629431 ~ 17635856 (-) True scyl3
XM_043219502.1 mRNA upstream 7594 17801666 ~ 17824200 (-) False swt1
XM_043219501.1 mRNA upstream 7594 17801666 ~ 17824200 (-) False swt1
XM_043219500.1 mRNA upstream 7594 17801666 ~ 17824200 (-) True swt1
XM_043219503.1 mRNA upstream 12057 17806129 ~ 17824201 (-) False swt1
XM_043219504.1 mRNA upstream 14129 17808201 ~ 17824201 (-) False swt1
TU205714 other downstream 361127 17346806 ~ 17428071 (-) True erh
TU205713 other downstream 361127 17425868 ~ 17428071 (-) False erh
TU205287 other downstream 1326982 16455468 ~ 16462216 (-) True G139030
TU205233 other downstream 1422426 16364810 ~ 16366772 (-) False fndc1
TU205232 other downstream 1423731 16364810 ~ 16365467 (-) False fndc1
XR_006247229.1 other upstream 16202 17810274 ~ 17824201 (-) False swt1
XR_006247304.1 other upstream 549400 18343472 ~ 18350122 (-) True adgrf3b
TU206351 other upstream 611955 18406027 ~ 18446949 (-) False G139706
TU206365 other upstream 612682 18406754 ~ 18442292 (-) True G139706
unassigned_transcript_2507 other upstream 1281974 19076046 ~ 19076118 (-) True trnaf-gaa_119

Expression Profile