RNA id: TU206138


Basic Information

Item Value
RNA id TU206138
length 4349
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G139567
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 17795484 ~ 17799866 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCGGCGATGAGTCGGCCATTCAGAGCTGCAATGCCCAGGCCGGAGCGAGCATAGTGCATGGGTGCCAGAAGCTTTTCGGGTTCCTCTTCCAGTGGCTGGCCCTCAAAGCTCAGGCTTTTGGTCAGACAAGGTGTGGCCGAGGGAGAGGCCTGGGGACTGCTGCGCCCATGCAGAAAGATCACGCACAGCATGCCGTTCAACACGGCCAGACACAGATACGTATTGTCTGTggggagagaaagaggacaGAGGTGACTTGAAGGAACTGTAGATAagttttgaaaatctaaagACATCAAAAGGTGCACACGTACTGGTGGTCTTCTCGGAAGCAATGTATTTCCACTCTTGCTTGCAGGTATGTTTGGCGGATCCAGGGGAGAGGCTGCCAGAGGAGCTGGTGCTCAGCTGTCGGTGTACATTCTCACGTGGGGGCTTCTTCTGCAAAGGCACAGCGCAGCTACAGACTCCGAGCCCATGGTCCACATACACACAACCTCACACAGTCCCAGACCCCGTCTAGGTATAAGCCTGACTCAACAACTTACCAGATGTTTTGGCCTGCATCAGGTTAAAGGAACATTCTGGGTTCAATACAACTTAAGCTCAATCGACAGCAATTGTGGCATAATGCTGGATGTGAACAGAGCACGCGCGTCCCATTATTTAATCGTTTGGTAAgcacttgtcaaagggagcgatgtcatttcctcattaaCTTCAACTGGggtgttcccatgacaacggaTGCAGCAGATTTGTCAAGGGgcggcataaaaaaaaaattacactaatatatatatatatatatatatatatatatatatatatataaaattttatacatattagtttttatatattagcatattttaaaaacattataagatataaaaatgtgtctATTTGCAAGTAATGCTaacaacaaaaagacatttacaacATTAAAGCAGCAACATCTGCTGATGCACATCATGCTGCGCATCATGCTCacgggaacatcccagctgaagataatgaggaaataaCATTGCTCCCTTTGAAAAGTGCATTCCAAATGACTAagtaataacacacacacatgctctgcTCACTGAAGTCCTCACTAAAAAGGGGATGAGGATGATCACCTTGATTCGGAAAATGCCTGTGAACCGCAAGACAGACGATAAACGATACACCCCTAGAAGGAAGGCAATGCAAAGaagttttttgggtttttttacagCTTGGCACTGCACAGCATCTTTATCATTTGGCTTATTCACCtctatttaaactatattagtAAATCAGTGAATGGGGCAAAACAGCCAGCAGTGTAGATGCTGCACTGATCTTTTTACACTGAAGCGATGTTTAGCTATGCTTATTTAATAAGTTGTACATTccacaagcttttattttagaagACTGGCTTCAATAAGTATGTTTTAGACCAACAGGACATTTTGAGTTTTACAGGatgtttttacagtacaatgaccttgtcaaaaaaaataaaaaaataataaagctaaTTTTGGTTTCTCGGTTTCTAATCCCTAGTTTAGTAAGGTACTTTTTTTAGGGAATTTTAAAGAATACAAAGCTTTATAAAAgtcttaaaattaatttatcttttaaagTGAGTGCATGATATAAGCTTTAAAAAATAGCTCAAATCGTTTAGTCATTTCAGGCCATTATGTTGTCATAAGCACCAGAGTTGCATATAAAGTTACACAGAAAAGATTAgcaggcagtttttttttcaaaccagaGATAAGTTAACAtgcatattgtttatattttgtggCTATACTATTGGAACAGTGAGTATTTAAGCATTAAACATAACAGATTAATTACTTGTACTGTAAGTGCCATGCTGTAATCCAGATTTTtgatgctttcttttttttaaggataaACCACAGCACAACACAGATGCTTTTGAATGAGCTTGTACTGAACCTTGGACAATTCTTTTAACCTTACATCTACTTTAATCTAATCCCAAACTAAAGCCACACTATAAGCAGCACTAAAACCCAATCCACACACTCATCACGCACACATCGTGATCGCTCTAGCTCAAAACGCTCAGACTCAACAGCCCAGCACAACAAAGCAGCTGCTCTGCTAGCATTAAATCTTGCGATCGCTACGGCCTGCTGCGGTCCAGCCTGAGAAGAGCTCGGCGCTGGTTGTGTACCTGCACAAACTGGATGTGGTCATCCTCAGTGCCGAACACCTCAGCCTGCCCGTCAAGCAGGCTCCCATCGAGCAGCTTGTGATCGGCCGAATAGTACAGCGTTTGCACctgcaaaacacacagcaaCAACAGAACCCATGTGGCTGTCTCCATGACAACAGAGCACCCAACTACGTGGGTCAAGGGAAGAAGGAAAGTTAAGAAGGGAAGGGCCAAAGCACTCGTTTGCTGCAAGATGCTGGTAAAAAACTTCTTAAAGAATAAGAACAGTGTTGTTGTGGATTCAGGAGCATTTCCAAAGATCTTCTGGACTTTTCACTGCACTGAAAACAGCAGAATGTGGATCACAATACTGTTCGCTGCAAAGCATCTTGGGAACCTTCATTTGTCAACAagtttgaagaagaaaaatagaCAAATAAGCTCCATCAGTGCATGTTCGGCTGTCATCCATCCTTTCAGCTGAGGGGGTTAGTCAAGTCAGATGTCATTACACAAACTCCAGGACAACACTGGTTAGCGGTTTTCAACTCATACAGCTCAAAAAGGAGTgcttcatttagaaaaaaaaaatgttggattGTCTTCAAGCTTAAACAAAGTTTTTTCGAAATTAAATGCCATACAAAATTTAGTTCAAATAACTGAAAAGAATTCCACTGAAATTGGACCCCCCAAAAAAGTGCATCGATGTCACTATTGCATTTCTATGTTTTGTCTATGGGCACTTGCAGATATATTAAGGACACAAGCATGGTTGCGTCACTATTTTCAGTGTCTTGCACAATCTGAAGTCAAAAAATTTGCTTCCCTTGACCAACTGTGTATAGTCTTGATGCCAAGTAAACAGGACCAGTATGTACtgctgaaacaaaaaataagtaatttgtGTATAACTATAGTAGTGTTTTATAGTTTGATAGaattagaaaaaaagtcatgtttcaATGTTTCCATGACTGACTGCTGTCACTTCCTGTGCCCATCCCTGTATCCAAAAGCAGATTAAAAGGAACTAGGAACTGAGAGCAACTTCAGAACATCTCTTTAAGCTGTACTCAGTTCTCACTTCCTTTATTTAGGATGAAACTTACTGTAGGTGCCATCATTAAGCCTTTAAAGGAAGGCTTTCATTCATAATTAATCAATATTCAGGAGTATACtgtgcatgtatttgtatgttaatTGCCTTAGTGGCATAAAGCATCCATACATGTGTGCCTATCATTTGAATATtcagtaatgtaaatgtatgcatgaGCAACTGAGTGACATGCTTTGCATGCATATGTGAGTTATAGTAAGTTAAATTAATGTGTGAATGTTTTGGTGGATCCAACATGGTGGTGCTCAGACATCTgaagtgtcattttaaatgaactgtgtACTGTTAGTGAGTGCATCTGTTTAAGAGGCAGGAGCCTAGCGCTCGTTTCGCCACAGCTCCCTCttgttcttttgttattttctttcattcactGACTCATTACCCTGGAGGGCCCCAGTCTTGGCTTCTTCAGTCTTGTGAGAATCCTGCTGATGTTTGCTCTAATAAACCTAAGGAGAGATAAATCAGTGGGGAGGAAGAACTGTTAGTGCTGGTTCCCAGAGCAAGCACACTCACTCAAACATTCACACACCTGCTTAGAGAAGAGAGAGATGTCATTGGGACGGCAACATGTCATGTCACTCTCTGTGAGCAGACAAAGTAGCTGCAGTTACTGCACAGCACTGAGCATTCAGGAGGCTTTTAGTTTGGCTCACCTGGACTACCCACTCGCCTTTGCGGAGGGTGTAACAGCCCCGTTCTGTACCTAAATGTATATTCTTTAAGGCCCGGGGTGATTTGAGTGTGAAGGGGGAGaggaaacaaaaaatataatggaaGGCAGAGAGAACAAACCCAACCAACCTCTACCATTAAGATGGCTGGTGTGACCTGTTAAATCTGTGAATGGGATGAATTACGAGGGGGAAAAAGGGGGGGAAGGGAGAGAGGAGCTCACAGTGGAGCGCAGTGCTCACCTCCTCCATCAGTCGCTCCAGGGGTTCGCCATTTTCCCACAGGCTGCGTTGCACCCAGCCAATCACCTTGGAGTACAGCTTGCCATTACTAGGCAAGGTCAAGTTATCCTCCAGCATCACCTCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206133 lncRNA downstream 1412 17789198 ~ 17794072 (-) True G139565
TU205819 lncRNA downstream 178976 17615793 ~ 17616508 (-) True G139387
TU205818 lncRNA downstream 179785 17615148 ~ 17615699 (-) True G139386
XR_006247200.1 lncRNA downstream 236014 17555855 ~ 17559470 (-) False LOC122324574
TU206130 lncRNA upstream 1536 17801402 ~ 17802196 (-) False swt1
TU206183 lncRNA upstream 88702 17888568 ~ 18180187 (-) False G139590
XR_006247178.1 lncRNA upstream 93870 17893736 ~ 17907615 (-) True LOC122324448
TU206190 lncRNA upstream 94136 17894002 ~ 17898622 (-) False LOC122324448
TU206185 lncRNA upstream 287346 18087212 ~ 18107403 (-) True G139591
XM_043220343.1 mRNA downstream 22743 17704918 ~ 17772741 (-) True hmcn1
XM_043220196.1 mRNA downstream 112529 17679203 ~ 17682955 (-) True ptgs2b
XM_043220197.1 mRNA downstream 129118 17663502 ~ 17666366 (-) True pdcb
XM_043218994.1 mRNA downstream 133420 17644978 ~ 17662064 (-) True tprb
XM_043219323.1 mRNA downstream 159628 17629431 ~ 17635856 (-) True scyl3
XM_043219502.1 mRNA upstream 1800 17801666 ~ 17824200 (-) False swt1
XM_043219501.1 mRNA upstream 1800 17801666 ~ 17824200 (-) False swt1
XM_043219500.1 mRNA upstream 1800 17801666 ~ 17824200 (-) True swt1
XM_043219503.1 mRNA upstream 6263 17806129 ~ 17824201 (-) False swt1
XM_043219504.1 mRNA upstream 8335 17808201 ~ 17824201 (-) False swt1
TU205714 other downstream 367413 17346806 ~ 17428071 (-) True erh
TU205713 other downstream 367413 17425868 ~ 17428071 (-) False erh
TU205287 other downstream 1333268 16455468 ~ 16462216 (-) True G139030
TU205233 other downstream 1428712 16364810 ~ 16366772 (-) False fndc1
TU205232 other downstream 1430017 16364810 ~ 16365467 (-) False fndc1
XR_006247229.1 other upstream 10408 17810274 ~ 17824201 (-) False swt1
XR_006247304.1 other upstream 543606 18343472 ~ 18350122 (-) True adgrf3b
TU206351 other upstream 606161 18406027 ~ 18446949 (-) False G139706
TU206365 other upstream 606888 18406754 ~ 18442292 (-) True G139706
unassigned_transcript_2507 other upstream 1276180 19076046 ~ 19076118 (-) True trnaf-gaa_119

Expression Profile