RNA id: TU206317


Basic Information

Item Value
RNA id TU206317
length 2098
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G139681
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 18255858 ~ 18313605 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATATATCTTTGTgatatatttgcaatataaaaaaatctaaatagcagatagaaaaatattatacaaaacatGAATACTTaccaatttttaattttaataaacggAACAACGCATCCAACTTATATCCTAAATATGAAAGTTTCACTCTGCTGCCACCTAACGgacattttacagtttacatttgCTCCTGTTATGAAATAATTTCAATACTCAAGTTGATGTTGCCATTTCCACAGACGCTTCTAACATgaaatccaatttttttttcttaaaatgacttttgttttcataaaatgatATCTTTCACATTCTTAAATTACAGGACAAGTGTACAAGTTAACTCAGAActgcataaaatgtattcacaTCAGTCCTGACATGTGCtgacaaacaaattaaattgtaatctCAGGTAATACATTTCGGTATCTACACGCTCATTTCAAATCAAACTCTgacattgaggaaaaaaatcccatatactcttttattagtttaaacCACAACACAAGAAATAGTGCAGCCATGGCATCAGGGGCACAATACATGCTACATgtacaaaataacttttaaattggaaaagttTGCCATTGCATGAATTTGGTGCGGTGCCTACGTAGGTAAACATTACAATGACAAAGGTTATGCTCGTGTAAAGCTCTTGACACTGGCAGAATGTACTTTCAAATGGAGCACAGAAATGTGCGTATTTAGAAATCGAGTCGGTGCTCAAAATGTGCAGTTGGTGCaaatgtctggatttaaaacGCTACGACCTCAGGGCTAACCTTTAAAACCCTCTGCTGGAGTTCTCTGGAGAGAAGCATGTAAAAAGTAGGAATAAATACGGTCATTTTAGCTGTCAAGAACGAGTTTGAACAGGTACGTTATTATTGTATATCACTTTAACCCTAAAAATGATCTTCATAAATTCATTCCATGCTCAGGCCCCACATAAATCTGCACACTGATATGCAATTTATTCCATTTGATGACATTCTGAAACTGCACAGCTTGTAGGTTTAAAATGGGAGTATTTTTATGCCGTAATATTTGGACCATGAGAATGAGTGTATGCTCTCAGTCCCAGTGAATTATCCTCACGGATTACATTCGGCCACACCGAATCCCTCTCGTGTGATGTACATGCTAGACATAGAAGGTGTAGTAAACTAGCCTTTTCCCATCAATGCATCACAAATCTTAGCGAAGCCAATAAATTATCCGTCTAATTCACGCCTCAAatgtttctcttaaatataaGGCTTGGAATCATTCTTTATGCAGGATGCAAATGAGGGAAGTACTCTTAAGGCAAACCTAATGGCATgcaaataaactacatttatatTCACCAACAGTACAAGCACATTTGAAGGGAAAAGTTCGATGGACATGAGCTTATCTTTTTGTCCATCCAGACGAGTGGGTAATTCCGGAACAGTTACGATTACCATAAGAATCGGTTCAGTTGACATTACGCAGTATATGGTACACATAGCTAGCATCAGTACAATAAATAGTAGCTCGATTTAATACAGCACATCAATGATGCGCAAGCTCCAGTGGATTCAGAAGGTACTTTGCACACTCTTCACATTTTGGCAGTTAATTTTGACaactcaatatatatatatataattctATTTGTGCATGGCATGGTCTGTGTGTGTACGCATTTGcagtgtatgcatgtatgtgtgtgtgtgcgaaggtgtttgtgtgtgcgtatgtgaaATTCGTTAGCAAAGAACATTCTCATGCACACAAGTGTTTCAAACACAGGAAGCGGATTCATTGAAAGGTAGTccaagcaattttttttttatcagtggaAATAGCTGCAAACTGAATGGAACATTAATCATTTGTGCAGTCCCTGGCTCTTTTCCGAGACGCTCATTTTTGCAGGTCACACTGCAGCAGTAATACAATGGACGGGTCACTCTTTGCTGCTTCTTTGAACTCTTCCAACGAGATCTGGTCGTCGTTGTTCTTATCCATCTTACTGAAGATTTTGTCGACTCGCTGCTCGGGCGTCAGGCCGTCCTCGTTCATCTTCATCATGATAACAGTCCCCACCATCTTGTAGATTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206313 lncRNA downstream 20536 18255858 ~ 18290820 (-) False G139681
TU206184 lncRNA downstream 131169 18107544 ~ 18180187 (-) True G139590
TU206271 lncRNA downstream 144625 18166126 ~ 18166731 (-) True G139653
TU206266 lncRNA downstream 153709 18156801 ~ 18157647 (-) True G139651
TU206185 lncRNA downstream 203953 18087212 ~ 18107403 (-) True G139591
TU206339 lncRNA upstream 25669 18339274 ~ 18339510 (-) True G139700
TU206340 lncRNA upstream 26424 18340029 ~ 18340244 (-) True G139701
TU206341 lncRNA upstream 27124 18340729 ~ 18341183 (-) True G139702
TU206343 lncRNA upstream 28442 18342047 ~ 18342330 (-) True G139704
TU206385 lncRNA upstream 92199 18405804 ~ 18411854 (-) True G139708
XM_043219315.1 mRNA downstream 80301 18214570 ~ 18231055 (-) False fzd3a
XM_043219314.1 mRNA downstream 80301 18214570 ~ 18231055 (-) True fzd3a
XM_043220435.1 mRNA downstream 148031 18161260 ~ 18163325 (-) True lft1
XM_043220328.1 mRNA downstream 159683 18134188 ~ 18151673 (-) True kif26bb
XM_043220334.1 mRNA downstream 179405 18123631 ~ 18131951 (-) False cnstb
XM_043219845.1 mRNA upstream 12322 18325927 ~ 18331052 (-) True pla2g7
XM_043220580.1 mRNA upstream 29858 18343463 ~ 18350122 (-) False adgrf3b
XM_043220579.1 mRNA upstream 29858 18343463 ~ 18350121 (-) False adgrf3b
XM_043218608.1 mRNA upstream 40565 18354170 ~ 18363861 (-) True LOC122324297
XM_043218603.1 mRNA upstream 53162 18366767 ~ 18401190 (-) True adgrf6
XR_006247229.1 other downstream 487155 17810274 ~ 17824201 (-) False swt1
TU205714 other downstream 883285 17346806 ~ 17428071 (-) True erh
TU205713 other downstream 883285 17425868 ~ 17428071 (-) False erh
TU205287 other downstream 1849140 16455468 ~ 16462216 (-) True G139030
TU205233 other downstream 1944584 16364810 ~ 16366772 (-) False fndc1
XR_006247304.1 other upstream 29867 18343472 ~ 18350122 (-) True adgrf3b
TU206351 other upstream 92422 18406027 ~ 18446949 (-) False G139706
TU206365 other upstream 93149 18406754 ~ 18442292 (-) True G139706
unassigned_transcript_2507 other upstream 762441 19076046 ~ 19076118 (-) True trnaf-gaa_119
TU206720 other upstream 941205 19254810 ~ 19256255 (-) False batf3

Expression Profile