RNA id: TU206341



Basic Information


Item Value
RNA id TU206341
length 455
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G139702
representative True

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 18340729 ~ 18341183 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ccgACGCACCAGTGGTGAAGCTTCTGCTGTTAGACATTTGAAGTGTTGCATCTGTATTCTGGTCCATAACCGCAATAGTAACTTGCCGATTCTCTGCAGGCCATTCTAATACAGCATCATTCTCACCAGAGAAGAGGTGAAACGTGATCCCGACAAACTCTTCAGATGAGTTTATCCTGCCATTTGGGTAAACATTAATTCCGTAAGCGTACCCCTCAGAGTTGTAAAAACGGTGACTCTGAACTCTTACACCATGTGGGACAGTATTAAGGAGGTTGGTGAAGTTCTGGATCCTCCAGACAGCATTTGGGCACGTTGTTTCAGTCAGAGTAATGTCATCTATAAAGATCCctcttgatgtttttttggagctAACGATACCCTGGAAAAAGTACCTGAACTTTTTCTCAACATTTAGAGAGACGTGTGCAATTTTCCATGACTCATCCCCATCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU206340 lncRNA downstream 485 18340029 ~ 18340244 (-) True G139701
TU206339 lncRNA downstream 1219 18339274 ~ 18339510 (-) True G139700
TU206311 lncRNA downstream 27124 18311356 ~ 18313605 (-) False G139681
TU206315 lncRNA downstream 27124 18311356 ~ 18313605 (-) True G139681
TU206317 lncRNA downstream 27124 18311356 ~ 18313605 (-) False G139681
TU206343 lncRNA upstream 864 18342047 ~ 18342330 (-) True G139704
TU206385 lncRNA upstream 64621 18405804 ~ 18411854 (-) True G139708
XR_006247142.1 lncRNA upstream 108761 18449944 ~ 18452122 (-) False LOC122324299
XR_006247141.1 lncRNA upstream 108762 18449945 ~ 18452116 (-) True LOC122324299
TU206392 lncRNA upstream 108779 18449962 ~ 18452132 (-) False LOC122324299
XM_043219845.1 mRNA downstream 9677 18325927 ~ 18331052 (-) True pla2g7
XM_043219315.1 mRNA downstream 109674 18214570 ~ 18231055 (-) False fzd3a
XM_043219314.1 mRNA downstream 109674 18214570 ~ 18231055 (-) True fzd3a
XM_043220435.1 mRNA downstream 177404 18161260 ~ 18163325 (-) True lft1
XM_043220328.1 mRNA downstream 189056 18134188 ~ 18151673 (-) True kif26bb
XM_043220580.1 mRNA upstream 2280 18343463 ~ 18350122 (-) False adgrf3b
XM_043220579.1 mRNA upstream 2280 18343463 ~ 18350121 (-) False adgrf3b
XM_043218608.1 mRNA upstream 12987 18354170 ~ 18363861 (-) True LOC122324297
XM_043218603.1 mRNA upstream 25584 18366767 ~ 18401190 (-) True adgrf6
XM_043220535.1 mRNA upstream 59983 18401166 ~ 18405819 (-) True LOC122325497
XR_006247229.1 other downstream 516528 17810274 ~ 17824201 (-) False swt1
TU205714 other downstream 912658 17346806 ~ 17428071 (-) True erh
TU205713 other downstream 912658 17425868 ~ 17428071 (-) False erh
TU205287 other downstream 1878513 16455468 ~ 16462216 (-) True G139030
TU205233 other downstream 1973957 16364810 ~ 16366772 (-) False fndc1
XR_006247304.1 other upstream 2289 18343472 ~ 18350122 (-) True adgrf3b
TU206351 other upstream 64844 18406027 ~ 18446949 (-) False G139706
TU206365 other upstream 65571 18406754 ~ 18442292 (-) True G139706
unassigned_transcript_2507 other upstream 734863 19076046 ~ 19076118 (-) True trnaf-gaa_119
TU206720 other upstream 913627 19254810 ~ 19256255 (-) False batf3

Expression Profile