RNA id: TU206721


Basic Information

Item Value
RNA id TU206721
length 1076
RNA type TUCP
GC content 0.41
exon number 3
gene id LOC122324949
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 19261466 ~ 19262952 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTCCGGCTACACTTCTGGTTACCATGGTTACAGTCGTTTCAGTCAACAAAGACTGAAATGACCACATGCAAATTCGACTTAACAAGTAGCCTACATTAGCAACAATGTCAAAATCAAAGCAAGACCAACTGTACGAGTTGAACATGCAGAGGGAGACGTGGTGTCGCGTGGAGACAACCAGTAGGTTCTGGAATTTAGCCGAAAGGAAACACTTCCGTTGTCACCTCAAGAACACCTGCGACTTCCGCGCGCTGCAGACCGCGCGCCCCGAGCAGCGATCCTCCTGGATGATGGACGGCGACAGCAACACCAGACATCCCGAGCGAAGACACTTCGAAGACAGCTATAAAACTCATCAGGTGTTAGGAACTGCAATCAACCTCTACGAAGAGTGAATGTTTTTCTCCACACGACAATAAACGTGTAATGAGCGGATCTGGCAATAAAACAGTGGTttagtacttatttattttatttaaatagtaatcTCATTGCCATACTGTTAAGATTTTGACACACTCTCCTCTGAGAGATCCCCATGTCCTTGTCCTCTCTACAActcagtttttttattgcattcccACACGGATGCTTTCCTCCCTTTTTCTGTGCAATTTAGTTTTTCCTTAATGTTCTGTAGCATCTCTCATAGACACATGTGTCTGGATGTTAGAAGGGTCCAGTCTTGctacacttttgatacttggcaaaaagaagtgttttttgttgtcCATGAGTATTCCTTATAACTTCCTTTTGATATCTCTATCTTATATAAgtacacatttttttggcatgtaTGCAACATGCGCCATCTTTGGTTTCATTGGCTAGAGGGGTAAAACTCCCCTCTGAAAATGCCTAAATAAACCATTGTATTTGGAAATAAATTTCGGAGCAAGGATATAtacgtctctgtgtgttttcttcctCCACaaattatatcaaaatattaattctagGTTTTTAACTTGGAAAACAATCGAAGGGCATTTTGCGTCGTGACTTCCATAACCACGTCTGAAGATAGTCCCTTAACTTTTGCAATGTAGTCACAGCAGATCTTTATGTTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206702 lncRNA downstream 10676 19224380 ~ 19250790 (-) True G139940
TU206658 lncRNA downstream 101309 19159838 ~ 19160157 (-) True G139903
TU206615 lncRNA downstream 217552 19040790 ~ 19043914 (-) True G139871
TU206550 lncRNA downstream 431667 18824880 ~ 18829799 (-) True G139823
TU206519 lncRNA downstream 590533 18669438 ~ 18670933 (-) True G139801
TU206741 lncRNA upstream 35391 19298269 ~ 19300293 (-) False angel2
TU206999 lncRNA upstream 72201 19335079 ~ 19341060 (-) True G140152
TU207027 lncRNA upstream 182950 19445828 ~ 19448712 (-) True G140175
TU207123 lncRNA upstream 474062 19736940 ~ 19737992 (-) False G140240
TU207125 lncRNA upstream 474062 19736940 ~ 19737817 (-) True G140240
XM_043219738.1 mRNA downstream 2768 19256688 ~ 19258698 (-) True nsl1
XM_043218875.1 mRNA downstream 5194 19254734 ~ 19256272 (-) True batf3
XM_043219539.1 mRNA downstream 28649 19179809 ~ 19232817 (-) False adat2
XM_043219537.1 mRNA downstream 28649 19199863 ~ 19232817 (-) True adat2
XM_043219538.1 mRNA downstream 28649 19220917 ~ 19232817 (-) False adat2
XM_043219807.1 mRNA upstream 35356 19298234 ~ 19303812 (-) True angel2
XM_043219776.1 mRNA upstream 192926 19455804 ~ 19487350 (-) True itpkb
XM_043219777.1 mRNA upstream 192926 19455804 ~ 19486264 (-) False itpkb
XM_043219789.1 mRNA upstream 251202 19514080 ~ 19516523 (-) True si:ch211-245h14.1
XM_043219788.1 mRNA upstream 251202 19514080 ~ 19516509 (-) False si:ch211-245h14.1
TU206720 other downstream 5211 19254810 ~ 19256255 (-) False batf3
unassigned_transcript_2507 other downstream 185348 19076046 ~ 19076118 (-) True trnaf-gaa_119
TU206351 other downstream 814517 18406027 ~ 18446949 (-) False G139706
TU206365 other downstream 819174 18406754 ~ 18442292 (-) True G139706
XR_006247304.1 other downstream 911344 18343472 ~ 18350122 (-) True adgrf3b
TU206746 other upstream 37498 19300376 ~ 19302848 (-) False angel2
TU206747 other upstream 37498 19300376 ~ 19303968 (-) False angel2
XR_006247245.1 other upstream 338654 19601532 ~ 19615202 (-) False trim54
TU207099 other upstream 794746 20057624 ~ 20059603 (-) True G140227
TU207100 other upstream 794746 20057624 ~ 20058499 (-) False G140227

Expression Profile