RNA id: TU207161


Basic Information

Item Value
RNA id TU207161
length 1906
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G140265
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 19905631 ~ 19909647 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGTATTTCAATGTTTGAAAAGATCACCACTGCACGATGCATACCGTTTCACATACtgttatataacaatattgtgTGCATCTATTTGACATACTTCCACTTAGTTTTCTACAGAGGCTCCTACACGACAACTAATTTCACTGCCAAATTAAAGCACTTACCTTTAAAGCTACACTAACCGCTTTCAGCGCAAAAGAGAGCTGCTAAATATTTGCCTCTGAAATCACATCTGAAATGACCTTGGAGAAGCCGGCTCTTGGCTCTGGCCTCAGAAACATGAGTGTGTATAATCCTCGGGCTGTATCAGTTCAGTGGGTGAGGCTGAACGCAGCGGGAGGAGAGCGAACGGGTAAAATGAAAAGTGCTGATGCCAGGAAGCCCAGCAGTAAAGCTGTGGGCCGCTCGGCTAAAGTGGACTTTTCTGAATGAGCAATGAAGTAACCATGTGCTAAACAAGCTTACTGTTACGAGGGCATAAAAGAGACACTGTATAGTAATTTTTACATCACTGAAAGGATGCCACAagatttatgtataaaaatctACAATGCTCGATCATGCATGAAATGTAATAGCGGGtcgaaaaattatatataaactaagCCTTAGAGTCGAAAATGTACTTGAACCAAGTAAGTTTCAAAATATCCATCAAACCTGGTATCCATTATAGTAAGTTGCAAAGAGTGATAATAAGCTCACATTCACCATTCTTTGATACAATGCagtagaaaaatgtatttaaactcaTATGTTTTATGTACCATTTTCTCATTATAAGATCTGAATGATGTGTCCTTACAGTTTACAAGTCAAAACAACATCCTTCATCTCGATAAAGCCTCGTCTCTCGTCATATTCAACACAGACTTTCAACacatcacaattaaaaacagattGAAACTGCAGTTACACAATGGACCAATACATAGTGTTgcttttcatgaaaaaaatcatgacatcataaaaaaaaaaaaaaaaaaattaaaatgcttttcccCCCAATGTAGCGATCAAGTAAACTCAGTGGTTGTTAGTTTCCtaaagaaaatagttttcagTTGATGCCACAGGGAACTAGAACTAGTATTCAAATTTGAAATCTGAGATCACATGATCACATGTACTTTGAAAACAGTGAAAGCAAACAAACcaaattatactaaaatgtgaaatgaataaCTATAAAACTACAATCTTTGATGTTTGATTATTTCctgcaaaatattacaaatcaaatGCAAGACCGAAACTGTAAAATActtgtacattaaaataaagttttggcAAGTCTTAATTAAGGGTtctacaaaaatactgtaaaacggTAAACATTCAcggagcagaaaatcagcatatcagaatgatttttgaaaaattacgTGACACTGGAAtaacagctgctgaaaattcagctttgccatcagaataaattaaaaaaggtacAATAACATACTActatattactgtaatttttgaCCAAATCAGCCTTGACGGCAATAAGAAGACTTCTTTTATAAATCTTACCAGCCCTACATTTTGAAAggtagtttatatatttgtaaacagCTCCTCATTCAGATGATATTTTTCTTCTGTGCACATGCATGCTGATGCATTTTGGCAGGTCTGTTACCTCTGCTGATCCTTTGTTTCTCTCCGCTCAGGATTCCTGGAGTGTCAATCACACTGATGCTCTCAGAACAGGGTTGGGCAGCTGGGCACACACAAACCTGTTAAGGAAGGCATTGCCAAAGGCGTTGAGTTTCCGAAGGGTTTTGGGATCCACTACCAGTGCGTTTCCTGGTATCTGTCCATCCATGCCGTGCATCACTGCAATGAAGGAGTCAGTTGTGGGTTCTGGACCGATCCGCATACCGGGGAAGTCTTGCTCCAGAAGATATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207139 lncRNA downstream 103963 19800522 ~ 19801668 (-) True G140248
TU207134 lncRNA downstream 103963 19800665 ~ 19801668 (-) False G140248
TU207124 lncRNA downstream 165268 19739699 ~ 19740363 (-) False G140240
TU207123 lncRNA downstream 167639 19736940 ~ 19737992 (-) False G140240
TU207125 lncRNA downstream 167814 19736940 ~ 19737817 (-) True G140240
TU207209 lncRNA upstream 238633 20148280 ~ 20167998 (-) True G140304
TU207223 lncRNA upstream 357021 20266668 ~ 20268266 (-) False G140315
TU207225 lncRNA upstream 357021 20266668 ~ 20268266 (-) False G140315
TU207226 lncRNA upstream 357021 20266668 ~ 20268266 (-) True G140315
TU207227 lncRNA upstream 357021 20266668 ~ 20268266 (-) False G140315
XM_043220540.1 mRNA downstream 56586 19827100 ~ 19849045 (-) True LOC122325502
XM_043219787.1 mRNA downstream 254502 19649188 ~ 19651129 (-) False LOC122324982
XM_043219786.1 mRNA downstream 254502 19649188 ~ 19651129 (-) True LOC122324982
XM_043219773.1 mRNA downstream 258543 19628786 ~ 19647088 (-) True cad
XM_043219797.1 mRNA downstream 277604 19616761 ~ 19628027 (-) False dnajc5ga
XM_043218919.1 mRNA upstream 159759 20069406 ~ 20071277 (-) True LOC122324484
XM_043219894.1 mRNA upstream 263901 20173548 ~ 20229821 (-) True rcan2
XM_043219895.1 mRNA upstream 263901 20173548 ~ 20195473 (-) False rcan2
XM_043219892.1 mRNA upstream 321328 20230975 ~ 20242311 (-) True LOC122325054
XM_043219893.1 mRNA upstream 348606 20258253 ~ 20263850 (-) True clu
XR_006247245.1 other downstream 290429 19601532 ~ 19615202 (-) False trim54
TU206747 other downstream 601663 19300376 ~ 19303968 (-) False angel2
TU206746 other downstream 602783 19300376 ~ 19302848 (-) False angel2
TU206721 other downstream 642753 19261466 ~ 19262878 (-) True LOC122324949
TU206720 other downstream 649376 19254810 ~ 19256255 (-) False batf3
TU207099 other upstream 147977 20057624 ~ 20059603 (-) True G140227
TU207100 other upstream 147977 20057624 ~ 20058499 (-) False G140227
TU207179 other upstream 151955 20061602 ~ 20062977 (-) True G140277
TU207486 other upstream 1063757 20973404 ~ 20975750 (-) False crnkl1
TU207613 other upstream 1289063 21198710 ~ 21278741 (-) True G140616

Expression Profile