RNA id: TU207227


Basic Information

Item Value
RNA id TU207227
length 631
lncRNA type inter_gene
GC content 0.60
exon number 2
gene id G140315
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 20266668 ~ 20268266 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttgtgacgggaggagccagcgacagacacagtgggcgtggcgtcaggcctcggagaggcttttattgataaaataataataataatacaaaataataaagtgtccagggaaagtgtccaaataaaaggggatctggtgtcctcgtcgtgccgcggggaaagtgaaggttgaggccgtgttccaggggagaagggtccaggtaaggggcggagtccggcggtcgcacacgctcccctttttctggtccggggcgcgaggggcggcggcttcttccgcggcgtctccgtcgcttcgttgctccgggcggcagagtgggatgagctctgtgttcacggacggcggggtgaggtccatcgcgcacccttcctggacccacgaggacaccagcgtgcatgcacgggggaagagaccggtctcccgaggagagacgcggtcaggtatttaacggcgacggtgacaaggctaatccccttcaggtgcgcctcgtcacacgccgccagacctgaccgataccacgcccctcctctcgaacacacccactcccgtcgggagcctggtgaagggcggcgaataaaggacggggtgatggtgacgataaagaggaggggcagccgactcgtcacagtATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207209 lncRNA downstream 98670 20148280 ~ 20167998 (-) True G140304
TU207161 lncRNA downstream 357021 19905631 ~ 19909647 (-) True G140265
TU207139 lncRNA downstream 465000 19800522 ~ 19801668 (-) True G140248
TU207134 lncRNA downstream 465000 19800665 ~ 19801668 (-) False G140248
TU207124 lncRNA downstream 526305 19739699 ~ 19740363 (-) False G140240
TU207243 lncRNA upstream 18214 20286480 ~ 20286995 (-) True G140328
TU207301 lncRNA upstream 142363 20410629 ~ 20411861 (-) False nkain2
TU207356 lncRNA upstream 358389 20626655 ~ 20626863 (-) True G140413
TU207360 lncRNA upstream 366044 20634310 ~ 20658357 (-) False pkib
TU207404 lncRNA upstream 468322 20736588 ~ 20791701 (-) True G140449
XM_043219893.1 mRNA downstream 2818 20258253 ~ 20263850 (-) True clu
XM_043219892.1 mRNA downstream 24357 20230975 ~ 20242311 (-) True LOC122325054
XM_043219894.1 mRNA downstream 36847 20173548 ~ 20229821 (-) True rcan2
XM_043219895.1 mRNA downstream 71195 20173548 ~ 20195473 (-) False rcan2
XM_043218919.1 mRNA downstream 195391 20069406 ~ 20071277 (-) True LOC122324484
XM_043220219.1 mRNA upstream 25028 20293294 ~ 20296159 (-) True ccdc25
XM_043218776.1 mRNA upstream 33140 20301406 ~ 20304874 (-) True pbk
XM_043218870.1 mRNA upstream 38373 20306639 ~ 20311285 (-) True LOC122324455
XM_043220350.1 mRNA upstream 43158 20311424 ~ 20328698 (-) True pex7
XM_043218711.1 mRNA upstream 62424 20330690 ~ 20334913 (-) True hey2
TU207179 other downstream 203691 20061602 ~ 20062977 (-) True G140277
TU207099 other downstream 207065 20057624 ~ 20059603 (-) True G140227
TU207100 other downstream 208169 20057624 ~ 20058499 (-) False G140227
XR_006247245.1 other downstream 651466 19601532 ~ 19615202 (-) False trim54
TU206747 other downstream 962700 19300376 ~ 19303968 (-) False angel2
TU207486 other upstream 705138 20973404 ~ 20975750 (-) False crnkl1
TU207613 other upstream 930444 21198710 ~ 21278741 (-) True G140616
TU207887 other upstream 1241363 21509629 ~ 21512353 (-) False LOC122324936
TU207950 other upstream 1464280 21732546 ~ 21741004 (-) False batf
TU207987 other upstream 1572847 21841113 ~ 21841468 (-) True G140883