RNA id: XM_043220489.1


Basic Information

Item Value
RNA id XM_043220489.1
length 5073
RNA type mRNA
GC content 0.41
exon number 7
gene id nkain2
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 20410629 ~ 20542249 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTACAGCCCGTTATATATCTGCATCTTGCCCAGTGACCCCCAACACCACACAGTCATTATTTCCATATCGTGTTGCTCTCACGCCCACTGAGAGAGGGAGCAGAGAGCTCATCCGGCGCATTGAGGGACGTCCAGGTCCTCATCTGCGCTCCGTACAGCATCAGCACCAGCCGCTGCGTGAGAAACAAACCGAGTCGCATCCCCGCGGAGAGCAGCCCCGCGTGCGCTTCATTCAATCTGGAGCGTCAGATGGTGCAAGATGCACCGCTTCTTTGTCCTCCTCTACACACGGGCTGTGCAAGTTAACGCTGGAAGGGACCAGTAGCCTAGTATTTGAGGCACCCGTTTCAGCTGCGCTGAAAGGTTCCTACAGGACGCGCGCTTGGATTATTGTCCTCGTATCACCGTTCCCGTGGATTTCCTGCTGGGCAGCTAAACACGCGCACCGCGGCTTCCAGAGAAATAAAGCGAGTCgctgatgtttaaaatgtgttaatttggTTTCTTTTTGTCGCGAGGGAGGAGCGATGAGAGCGTAAACAACACTGGGTGGCTTTGTTTCTGAGACACGGACCCGTGGAAGATCACACTGACATGTCTTTCAGTGCCGGATTGGGAGCTACCGTTATTTCTCCACTAACTTAGGGAAGTGCTGTTCGTATCTCTTTGACTTTGCATATCAGCTCGATTCTACTTTTTAACAAACACATGCAGTTTTCTTCGTATCTTCTTCCTACGTGGTGGAGCGCTTGGGATGCTTTCGTCGGAAGGGCGTATTTGATTCGCGTCTGTCGCCTTTGGAGTGAAGAAAGACCCCTTTAAACTCGTTGCCTCGGCGCTATCTTGTGGAGTTACAGCGACCCACGTGGAAACACGGACTCGAAGGAGGACAAGATGGGCTGTTGCAGTGGTAGATGCACGCTGGCATTTATATGTGGCATGCAATTGATCAGCATTCTGGAGAGACAGATATTTGATTTCCTCGGATACCAGTGGGCTCCGATTCTCACAAACTTCATCCATATCATCACAGTGATCCTAGGCCTCTTTGGGACAGTACAGTTCAGACCGCGATATGTGACCGGGTATGCAGTCTGGTTGGTGCTGTGGGTCGCCTGGAACGTCTTTATCATCTGTTTCTATTTGGAAGTGGGTGACCTTTCAAAGGACACAGATCTGATTATGACCTTCAACATCTCCATGCATCGCTCCTGGTGGATGGAGAACGGCCCGGGGTGCAGGGTGACCCCCGTGACCCCTCCTCCCTCCTGGGCCCCGGAGGACCACCGCTACATCAGCATCGCCGGATGTCTGCTAGAGTACCAGTATGTGGAGGTTGCCCACAGTTCCTTGCAGATTATCCTGGCTCTGGCTGGGTTCATCTATGCCTGTTATGTTGTGAAGCTCATTTCAGAAGAGGAGGACAGCTTTGACTTTATAGGAGGGTTTGATTCGTACGGTTACCAAGGGCCACAGAAGACGTCACATTTGCAACTACAACCAATGTACATGTCAAAGTAAAAGGATAACTGCCTTATCAGCCAATCAAAACAACGAACTGATGTTTGGACTCGTCTTTCTACGTAAATGTCTTAACATGATAGTGTCTTACGAACTGTCGGAGGAACACAGAACCGACACTTTAACCTCAAAGACTCCAAGTGGATTTTCTTTGTCTACGCCCAGCCCTTCCTCCTCCAGAGCGCTGCGTTCAGGCGCGAGAGAGCCCTCGTGTGGATAAACCCTCGGCAGACTCTCAACATTGCGGCCATTAGCAGTGCAAAAAATGGAGGAGCAGATTGAGTGGACCGATCTGCAATAAGAAAGACTTGGAATCGTGCAATGGATATAGTGTCAGTGTCTCCAACTGGCTTTCACGGAAACCATCCCATACTTAAAGAATGTTCATTAACTAGTCAGTATGATATTAGTTATCTAGTCCTACAATCTTTCAAATGGTGACTGGAGTGGGGAGTCATTATTCCAGTTGTGTTTACAAAGGGTCATTCCAAGCATTGGAATCGCCGTCGGTGTTTAATCGCAACCCAagtagtttttttcttctttctcctgGATGTACTTGTCTTGAAAGTGCCAAGAACagttacgaaaaaaaaaacccaacaaaacaaaacgaatAAAGAAATCGGTAGCTGCTAAGAGATTCATATTTTTTGGAGTGAAACGAAAGtcctgaagagaaaaaaaaaaaaaacgattttatcCGTTCGACGTCGCCATGGGATCAACCGTATTTGTTTGCATGAGGTGTCAAAATCTGTTGCGTATTTAATATCTTTCAGCTAGACATAGCCCGAACCTTGGAAGGGGTAACAGTCGCTCCAAAAGGTAACTTgtgaatattgttgttttttaagacGGTGTTGAGTCTTGTTAACAAGATAACGGATAGAAAACCAATTGTAACTTCTTTCTATTTTAAGCCTTTTTTTAACGTGTGCAGGTGTTCACTCTTTTGTAGTAGACTAATAATTTATTATGCCGTGTAAGTGGGCCTTTCTTTTCGATATTCCTGTACATATTGAGGGGGGTAGGGATAGAGACGCAGTGTTTCTAGTGATGTGATGTGTGAGGAGGTGTGTGGAAGAGTCTAATCGGGTTAGAGCGCTTTGTTTCGTGTAGTGACAGGAGTCCCTAAATGATCTGTTCCCCAACTTTGAAGCGAGAGGTCAGAATTGCGCAAAATGCTGAAGCTATTCAGGTCTTTCCCCTTGATTTACGGCTTCTTTTGTAGCCTGCCTCCTGAATGAAGTTTATAAATGCTGCACTTTCAAATGCCGTGCATATCGTAGCCCTTGGATGATGCGTGAAAGCATGAAATGTCTTCATTTTGGTCAAACTACCATGCCAAACGCAGCCGAATAACGCACTTCCCCCTTCCTCGACTGATAATGGATGATGAAATGTGTATTTCTCCACTGTATATTATCTTTTCCCTCAAAACTGATTCTAGTAACTGTGTGGAGTTGACGTATATCTGCGCTTTAGTGTGGAGTTTCCTGAGAGAAAGTGCCTGAAATGACATCCTGTTAACATTCCAATAAATGGCAATCTGCTCTCATCCAGAAAGGCTGTATATAAACAGAGGGTCCGACTGAGCTGTGTTTAATCAAACCCCTTGTGAACTGCACTGGCAAAGCTAAGTGGCTTTGATaattaataaagatattttagcCGCACCACACTCCAGACCTCACTGGAAAATAATTCCCTGCAGTCTTTTGCTGCAATCTTTCTGCATCCGACTCAATACGGAGTGATAAATGTTAGTTTGGGTAATGCAATTAATAAGAATGATGGCTTTAGAAATGGAAAGCTGTATGGGTATGTCTCACAGAACCTTTCAAGAACCTATTTGAGGTTATATTTCATCCCCAAAATcttcaaatacatatatatcttttgaaaaataatacttttgaggcatttttattgttatttttagtaataagggtggctatttattatataatttatcttaaattatttattaaaatactttaatgcaCAAAAATCACAATCTTATACTCTACtgctaaatataatattaaaatgggaATATGATAATATGATATAATGAGAATGACTATCAAGAATATTgatcatttaatttctttttcttatatatataattaaggaTGAAATAAAGGATCTTAATGAGGTCTTAAAAggattaataaaaaagaattgattttgattttattattggttctaaaactatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaaggcttATTTTAGGACATTAACAAAAGTGTTGAATATTAATATCTTACATATCTTAAGCCTGGAATACACTACCCGATTATGGCCCTGATCTTACAGTCTGAACAAGTTAAAGCTAGTTGAGGAAAGTCAGAGCCAGTCAACTCCGGTTTTTTAGCTTCAGACATTGATTCCATCCAGTCGGAGGTTATTAAACGTTTAATATTTTCCGCCGATTTttgaaacacatttgttttcatttgtcatgcGTCTCCTGGCAACAAGGCGCGTGTTTCTGCGTGAGTGTCTGGTAGTGTATGATCCCCGGTCATGTAGCGTATAATGCACAGCGTATTTTCATTTGTCACTATTTACAGAGTCTGTAACTGTATGATgcctagtgttttaaaaaatctgttcagaagtcgtgtagtgtattccagcctttaatcttaaatatatcataatggATCACCTTAAGTATATGGTCCTAATATcgtatcattgtttttttaataattaatttaatttacttaactTTTGGGGGTGAAATGTGACTTGGACATGTTTTCCAGAGATTTGCCTCTGTAATTGCTCTTGCTTGAAGGTTTTTGATTGCCTCAACTTCTCAAAGATAAGCAGATTACGTCAGCCTGACTGCTGTGCAAGTGAGTTTCAAGACATTTGTAAATACATCCTGAATCAACATGGTGCTTGATTAGACTTTatcatattaaacaataaaaaaaaaaaacatgttcttgCTCTCAATATATTTGCAAGGCGCAGTCTAAGCTTACGTGAGATTTACCCTGCATTAATACATGTAAAACAACACTTGACGGTATTAATGTCAAATCTGACTATCATACGGTAATTATGAGCTGAAAGAAACCTGAATGAAAACGAATACCTTCAAGTTCAGGAAATCTTGCATGATGCTTCTACCCAGGAGTGTATGTGATGTCACCATGGTAATGCTCTaaccaaaactgtaaataaaaaatatggatTTAGAAATTAGTTGTGGAGTGTTCGACATGGTCCGGGGCGAAATCAGAAACGTAGCTTTCATTTGACGATGCATTGTAAGAGTAGCTGAAACATTCTCGTTAATTAAATGGTAAATTACGATATCCTAAAACAAGTGACACTCACGGTAGATGCTTTGAGCAGCTTCCCGGGTTGTTTTCATTGGGTTCAGTGCTGAGTTTTGAATAGATAGGCCTTTTCTATTTCTGTTACTTTTAAAGAATGACTGTAAATAAAACCAGACTGTGTCAATGA

Function

GO: NA

KEGG:

id description
K22735 NKAIN; sodium/potassium-transporting ATPase subunit beta-1-interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207243 lncRNA downstream 123634 20286480 ~ 20286995 (-) True G140328
TU207223 lncRNA downstream 142363 20266668 ~ 20268266 (-) False G140315
TU207356 lncRNA upstream 84406 20626655 ~ 20626863 (-) True G140413
TU207360 lncRNA upstream 92061 20634310 ~ 20658357 (-) False pkib
TU207404 lncRNA upstream 194339 20736588 ~ 20791701 (-) True G140449
TU207403 lncRNA upstream 247657 20789906 ~ 20791701 (-) False G140449
XR_006247242.1 lncRNA upstream 450272 20992521 ~ 20995513 (-) True LOC122324961
XM_043219209.1 mRNA downstream 3567 20373185 ~ 20407062 (-) False tpd52l1
XM_043219207.1 mRNA downstream 3567 20373210 ~ 20407062 (-) True tpd52l1
XM_043219210.1 mRNA downstream 4532 20373210 ~ 20406097 (-) False tpd52l1
XM_043219213.1 mRNA downstream 22151 20373210 ~ 20388478 (-) False tpd52l1
XM_043219211.1 mRNA downstream 22151 20373210 ~ 20388478 (-) False tpd52l1
XM_043220366.1 mRNA upstream 54014 20596263 ~ 20616215 (-) True clvs2
XM_043220374.1 mRNA upstream 84724 20626973 ~ 20632507 (-) True smpdl3a
XM_043220375.1 mRNA upstream 90468 20632717 ~ 20633782 (-) True fabp7b
XM_043218760.1 mRNA upstream 92047 20634296 ~ 20658380 (-) True pkib
XM_043220479.1 mRNA upstream 118762 20661011 ~ 20673120 (-) True cpsf2
TU207179 other downstream 347652 20061602 ~ 20062977 (-) True G140277
TU207099 other downstream 351026 20057624 ~ 20059603 (-) True G140227
TU207100 other downstream 352130 20057624 ~ 20058499 (-) False G140227
XR_006247245.1 other downstream 795427 19601532 ~ 19615202 (-) False trim54
TU206747 other downstream 1106661 19300376 ~ 19303968 (-) False angel2
TU207486 other upstream 431155 20973404 ~ 20975750 (-) False crnkl1
TU207613 other upstream 656461 21198710 ~ 21278741 (-) True G140616
TU207887 other upstream 967380 21509629 ~ 21512353 (-) False LOC122324936
TU207950 other upstream 1190297 21732546 ~ 21741004 (-) False batf
TU207987 other upstream 1298864 21841113 ~ 21841468 (-) True G140883

Expression Profile