RNA id: TU207360


Basic Information

Item Value
RNA id TU207360
length 1375
lncRNA type sense_over
GC content 0.42
exon number 3
gene id pkib
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 20634296 ~ 20658380 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGAGAAGGAGAATCACGACGAAGATGGTCTCAATACGCGGAATTCCCCTCGCGGATAGCCTCTGTTGGTACTGATTCGGAGTGTTCTCCCGGATAACTCTGCTTCGAGGAGTTGCTTCATGTTCGGAATGATGCTATGAAGACCACCAGAGATGACTGATGTGGAACCTGTTGTCTCTGACTTTGCAGCCACGGGCAGGACTGGCCGGCGGAATGCATTGCCAGATATTCTAGGTTCCACAGCCGGCCCCGGAGCTGCTGACCTGCCTGACAAACTAGCCGAGCTTTCAGTGGGAGATGATGGTGAACCGTGCGGAGAGAGCTCGTCCTCGTCCGACCCACCTAAAGAAACCACAGAGGGGGCAAAGACAGAGGGCTCATAACTCGGCAGTGATCTGACCTCACGAGAGACTCACACATGACCTGCCTCTTCTCTTGCCCCATTGACCAAACAACTGTTACACTCTGCGCTATGCAACATCGAGACCACCCATGACTGGCTTTCAGACGCGGGCCAGCGGGGAAGCAGCTCATTCCTATTACAGGAATTCATCCGAAATTGCGTTTTTCAAATATCAACTATTGTTCATTTCATACCTCGATGACTTTGTcagatttgactttttttttcccccaaagaCTCGCTGTCATGATTTTCCTAACGACCGGCTGTTTCGTGTGTCTTATGAAAACAGATGTGACCTGCtttcccatttaaaaaaaaaaaaaaaaaaaaaaacattttgactttCCATAATAGCATTTTTCTCTGAATGTTGACATGTAGTGgcaaaaatgtctctttttgcacaaaaaaaagtaaatacattccATTTGGTGATGTAAGTAAAGTTTTTTATCTTACGATTTTTGTCTGTCCTTGTATAACGCCGCATCTTCTGTGTTTTGTATTGTTAAGATATGCATTGTTAACATTCTAGCCAGAGGATAAGAAACAGTGCTGAATAACACGAAATATGATATTTTCTTCTTGTAAATACAGAATTGTACATTATATTTGCTAGTTTTGTTTAAAAGCCTTTTGTTTTGTGCGTAACTGCTGTCAGTGTTGCCCTGCGTGAGCTGATATTGGATTGTTAGCTATGAAGTTTTGCTGCAAACATCCGTGTTCATGTCATTCGGACGTCCTCTTAAGTACTTGTCTCAGATATTTCTTTGCTGTTGTCGATGGCAGTGAAAAAATATGACTGCGGAGACTTGCTGttcttcctctctttcatcTTTTCATCATGCTTCCATCAGAAAATGacatctgttttcatttttacctgGCCATAATTCTTGTGTCATTTCGTCTGTTGTAAGCTACATGTAAAATGCCATTAtgctatgtttaaaaatgacaataaatccT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207356 lncRNA downstream 7447 20626655 ~ 20626863 (-) True G140413
TU207301 lncRNA downstream 222449 20410629 ~ 20411861 (-) False nkain2
TU207243 lncRNA downstream 347315 20286480 ~ 20286995 (-) True G140328
TU207225 lncRNA downstream 366044 20266668 ~ 20268266 (-) False G140315
TU207404 lncRNA upstream 78231 20736588 ~ 20791701 (-) True G140449
TU207403 lncRNA upstream 131549 20789906 ~ 20791701 (-) False G140449
XR_006247242.1 lncRNA upstream 334164 20992521 ~ 20995513 (-) True LOC122324961
TU207496 lncRNA upstream 338009 20996366 ~ 20996681 (-) True G140522
XR_006247273.1 lncRNA upstream 387468 21045825 ~ 21049976 (-) True LOC122325251
XM_043220375.1 mRNA downstream 528 20632717 ~ 20633782 (-) True fabp7b
XM_043220374.1 mRNA downstream 1803 20626973 ~ 20632507 (-) True smpdl3a
XM_043220366.1 mRNA downstream 18095 20596263 ~ 20616215 (-) True clvs2
XM_043220489.1 mRNA downstream 92061 20410629 ~ 20542249 (-) True nkain2
XM_043220490.1 mRNA downstream 92886 20419402 ~ 20541424 (-) False nkain2
XM_043220479.1 mRNA upstream 2654 20661011 ~ 20673120 (-) True cpsf2
XM_043218599.1 mRNA upstream 16640 20674997 ~ 20680821 (-) True riox1
XM_043218860.1 mRNA upstream 48568 20706925 ~ 20718097 (-) True ints9
XM_043218859.1 mRNA upstream 48568 20706925 ~ 20717973 (-) False ints9
XM_043218861.1 mRNA upstream 86845 20745202 ~ 20757734 (-) True hmbox1b
TU207179 other downstream 571333 20061602 ~ 20062977 (-) True G140277
TU207099 other downstream 574707 20057624 ~ 20059603 (-) True G140227
TU207100 other downstream 575811 20057624 ~ 20058499 (-) False G140227
XR_006247245.1 other downstream 1019108 19601532 ~ 19615202 (-) False trim54
TU206747 other downstream 1330342 19300376 ~ 19303968 (-) False angel2
TU207486 other upstream 315047 20973404 ~ 20975750 (-) False crnkl1
TU207613 other upstream 540353 21198710 ~ 21278741 (-) True G140616
TU207887 other upstream 851272 21509629 ~ 21512353 (-) False LOC122324936
TU207950 other upstream 1074189 21732546 ~ 21741004 (-) False batf
TU207987 other upstream 1182756 21841113 ~ 21841468 (-) True G140883

Expression Profile