RNA id: TU207404


Basic Information

Item Value
RNA id TU207404
length 1416
lncRNA type sense_over
GC content 0.42
exon number 3
gene id G140449
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 20736588 ~ 20791701 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtttgtttatgataggcacagtttatttaattcaaaccaCTTTGGTCCCTTTCacctttcaaattaaataaatatactgtgtgAAACACTCATAACGTCACATTCCCACAGAAATGGGCCAGAAAGGATGGCAAGAGCCGACATCAGTTCTTCTTCTGAGGGAGGGCTGCCCTCAGTAGCTCATATATGACATATACAACCCATAGTTGAACGGTAAAGAACAGCATCAAAGACTCCTCCCTTCAGATGAACTGGCATCCCATTGGTCTcctaaatacaaaacacaaatcaacATTTCGATAAGCGCctataaaaaatgataaaacacactCCCGAGAACAAAGCAAGGTCTGAAGCATTATATACCTTTAGAGAGAACGCAGATGATTGGTAAAGATATCGGGGGAACATTAGCTCATTTGACagattacaaaaacacattacagaAAAGTGAAATCCACACCTGGAAGAGTTTCTGTTTGTCTGGCACCTTGTTGACCAGCTGCCTGCGGACGGTGCTGGAGATCTGCCGTCTGGAGACCTGCTGCAGAGTcttcaaaagtgttttgaaatacaTGGGATACATTAATTTCATGCACTGGATCAAACATGTTCTAAATTATATAACACAAATTACGTAGAAAATGTTTGTTCCAGTAGTTTAATGCATGTATTGGTCTAATTACCTAATACCGTGtcacactaccattcaaaggtttgggctCAATTAtcttatttgaatttttttgaaggaagtctcttctgctcaccaaagcttaatttaactgataaaaaaacgcagtacagtataaacagtaataaaattaaaacaatcttACAGACCTCAAACTTCTGAACACTAATCTACAgtctaaaaaaaatgcataaataagaGAGGATCATGATGCTCTTCACGTACCCCTGGGATATTTGAGACGATCTCAAACGTGACTCCACAGCCGTGAGTTGAGCTGCGGTGAGACATTCTCCTCAGCAGACTTTGAGCAAAGCCCTGCAGGAAGAGATCAGATCGATAAAAGGGCACTCAATAAAAAACACGAAAATCAGTCAATCACGCACCTGTCGTCCGGTGAGGGTCACACAGATCCGTTTGCGCAGGACCAGCTGCATTTGTGCAGGATGACTGAGCAGAACCATGGTGCGGACGGTGAGGTAGATCCTGTGATCCGGCCCCGTCGCTCGGTTCAGCTCAGGACTGTCATGAACGGTGCAGTCCCATGATGCCTCTGCCTTCACCTGTGGGAGGAGAGCGAGTTCTTCATGTAATGTGGTGCAGTTTTCTGTCTCACTGAGAAGCAAAATACTCTCCTCACCTCTTTCTCATAGTACTTGACGATCTGTAAGTCCATGAAATCATCTTTATCTTCTCTGTCGAGCGCAGCATCCAGACCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207360 lncRNA downstream 78231 20634310 ~ 20658357 (-) False pkib
TU207356 lncRNA downstream 109725 20626655 ~ 20626863 (-) True G140413
TU207301 lncRNA downstream 324727 20410629 ~ 20411861 (-) False nkain2
TU207243 lncRNA downstream 449593 20286480 ~ 20286995 (-) True G140328
TU207226 lncRNA downstream 468322 20266668 ~ 20268266 (-) True G140315
XR_006247242.1 lncRNA upstream 200820 20992521 ~ 20995513 (-) True LOC122324961
TU207496 lncRNA upstream 204665 20996366 ~ 20996681 (-) True G140522
XR_006247273.1 lncRNA upstream 254124 21045825 ~ 21049976 (-) True LOC122325251
TU207582 lncRNA upstream 291593 21083294 ~ 21083559 (-) True G140592
TU207583 lncRNA upstream 298283 21089984 ~ 21090943 (-) False nkx2.2b
XM_043218860.1 mRNA downstream 18491 20706925 ~ 20718097 (-) True ints9
XM_043218859.1 mRNA downstream 18615 20706925 ~ 20717973 (-) False ints9
XM_043218599.1 mRNA downstream 55767 20674997 ~ 20680821 (-) True riox1
XM_043220479.1 mRNA downstream 63468 20661011 ~ 20673120 (-) True cpsf2
XM_043218760.1 mRNA downstream 78208 20634296 ~ 20658380 (-) True pkib
XM_043218874.1 mRNA upstream 153936 20945637 ~ 20964922 (-) False cd109
XM_043218873.1 mRNA upstream 153936 20945637 ~ 20964922 (-) True cd109
XM_043219753.1 mRNA upstream 176487 20968188 ~ 20975755 (-) True crnkl1
XM_043219541.1 mRNA upstream 288103 21079804 ~ 21082714 (-) True nkx2.4b
XM_043220497.1 mRNA upstream 297703 21089404 ~ 21091008 (-) True nkx2.2b
TU207179 other downstream 673611 20061602 ~ 20062977 (-) True G140277
TU207099 other downstream 676985 20057624 ~ 20059603 (-) True G140227
TU207100 other downstream 678089 20057624 ~ 20058499 (-) False G140227
XR_006247245.1 other downstream 1121386 19601532 ~ 19615202 (-) False trim54
TU206747 other downstream 1432620 19300376 ~ 19303968 (-) False angel2
TU207486 other upstream 181703 20973404 ~ 20975750 (-) False crnkl1
TU207613 other upstream 407009 21198710 ~ 21278741 (-) True G140616
TU207887 other upstream 717928 21509629 ~ 21512353 (-) False LOC122324936
TU207950 other upstream 940845 21732546 ~ 21741004 (-) False batf
TU207987 other upstream 1049412 21841113 ~ 21841468 (-) True G140883

Expression Profile