RNA id: XM_043219753.1


Basic Information

Item Value
RNA id XM_043219753.1
length 2490
RNA type mRNA
GC content 0.50
exon number 14
gene id crnkl1
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 20968188 ~ 20975755 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGCAAACGCGACGCGCGACACACGGCACCGAAACGTCGCTAAAGTTTTGGCGGCTTATCGAAGTTTAAAAACGTAAAGGAATACTCAAAGGTGCTTTATAATAAAGTGACAGGAGCGAAATAGTCATGGCGTCCACCGCGGCGGGTAAACAGAGAATACCGAAAGTGGCGAAgGTGAAAAATAAAGCCCCGGCGGAGGTGCAGATCACCGCGGAGCAGCTGCTTAGAGAGGCGAAGGAGAGGGAACTAGAGCTGCTGCCTCCTCCACCCAAACAGAAGATCACTGATTCAGAAGAACTCAACGACTATAAACTGAAGAAGAGGAAGGGGTTTGAAGACAACATCAGGAAGAACAGAACTGTCATCAGCAACTGGATCAAATACGCACAATGGGAGGAGAGCCTGAAGGAGGTCCAGAGAGCTCGCTCTATATACGAGCGGGCACTCGACGTGGATCACCGCAACATCACACTGTGGCTGAAGTATGCAGAGATGGAGATGAAGAACCGACAGGTGAACCACGCTCGCAACATCTGGGACCGAGCAATCACCATCTTGCCCCGTGTCAATCAGTTCTGGTACAAGTACACCTATATGGAGGAGATGCTGGGAAACATCGCTGGCTGCAGGCAGGTGTTTGAGCGCTGGATGGAATGGGAGCCGGAGGAACAGGCCTGGCATTCGTATATCAACTTTGAGCTGCGGTATAAGGAAGTGGACAAGTCCCGCAGCATCTATGAGAACTTTGTGATGGTCCATCCCGAAGTGAAGAACTGGATCAAGTACGCTCATTTCGAAGAGAAGCATGGTTACATCGCTCGAGCGAGGAAGGTGTTTGAGAGAGCTGTGGAGTTTTTTGGCGAGGAGCAGATCAGTGAGAGCCTCTACGTGGCTTTTGCCAGATTCGAGGAGAAGCAGAAAGAGTTTGAGAGAGTTCGTGTCATCTATAAATACGCTTTGGACAGAATCCCCAAGCAGCAGGCCCAGGAGCTGTTTAAGAACTACACTGTGTTTGAGAAGCGCTTTGGAGACAGGAGAGGAATCGAGGACGTGATCGTCAGCAAAAGGAGGTTTCAGTATGAAGAGGAAGTTAAGGCTAACCCACACAATTATGATGCCTGGTTTGATTACCTGCGGCTGGTGGAGAGTGACGCCGATGCAGACACGGTTAGAGAAGTGTACGAGAGAGCCATTGCCAACATACCCCCCATCCAAGAGAAGAGACACTGGAGACGCTACATCTACCTGTGGATTAACTATGCTCTCTATGAGGAGCTGGAGGTCAAGGACCCTGAGAGAACGAGGCAGGTGTATCAAGCGTGTCTGGAGCTTATACCACACAAAAAGtttACATTCGCCAAGATTTGGCTTTTATACGGACAATTTGAAATCAGACAGAAAAACCTTCAGAATGCTAGACGAGGCATGGGTACAGCCATCGGAAAGTGTCCCAAAAACAAACTGTTCAAAGGCTACATTGAGCTGGAGCTACAGCTGAGAGAGTTTGATCGCTGCAGGAAGCTTTATGAGAAGTATCTGGAGTTCAGTCCAGAAAACTGCACCACCTGGATCAAGTTTGCAGAGCTGGAGACCATCCTGGGAGACACAGACCGGGCCAGGGCCATATTTGAACTGGCCATTGGACAACCGCGACTTGACATGCCAGAGGTGCTGTGGAAGTCCTACATCGACTCTGAGATCGAGCAAGAAGAATATGACAACACACGAGGGCTTTATAAAAGACTGTTACAGCGTACTCAACATGTCAAAGTCTGGATCAGCTATGCTCAGTTTGAGCTGTCCATCGACAGTGACGACCGCATTCAGCGGAGCAGACAGATCTACGAGGAGGCCAACAAGAGTATGCAGAGCTGTGAGGAGAAGGAGGAACGTCTGATGCTCCTGGAGTCTTGGAGAGACTTTGAGGATGAATTCGGATCGTTCACCAATAAGGAGAGAGTGCGCAAACTCCTGCCAGAGAaggtgaagaagaggaggaagatcACAGCAGAGGACGGGTCGGATGCAGGTTGGGAAGAATATTACGACTACATCTTCCCTGAAGATGCTGCCAACCAGCCCAACCTCAAACTGCTGGCCATGGCCAAGATGTGGAagaagcagcagcaggaggatgagaaagaccaggaggatgaggatgagaaggaggaggaggaggaggaggaggaaggaggaCAGCAGGTTCCTCAAGGGAAAGAAGCACAGGAGAGCCCAGAAAGAGAGGAGCAGGGACCTGCAGCCAGCACAGAACAGCCTGAAAACGAGTGTGATGATCGCGACGATGAGAGCAGCAGCAGTGAAAGCGAGAGTGACGGTGGCGACCGTGAAGAGGACAAAGACGAGACGAAAGAAACAAAAGCGGACACAGAAAATCAGTGACCTAGTGTGCTGGAACTTAACACGTTATTTGTCTCcgtttctttctgtctgtctctcttcttttgtaacaaaataaagGTGTGAACCAAA

Function

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K12869 CRN, CRNKL1, CLF1, SYF3; crooked neck

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207404 lncRNA downstream 176487 20736588 ~ 20791701 (-) True G140449
TU207403 lncRNA downstream 176487 20789906 ~ 20791701 (-) False G140449
TU207360 lncRNA downstream 309831 20634310 ~ 20658357 (-) False pkib
TU207356 lncRNA downstream 341325 20626655 ~ 20626863 (-) True G140413
TU207301 lncRNA downstream 556327 20410629 ~ 20411861 (-) False nkain2
XR_006247242.1 lncRNA upstream 16766 20992521 ~ 20995513 (-) True LOC122324961
TU207496 lncRNA upstream 20611 20996366 ~ 20996681 (-) True G140522
XR_006247273.1 lncRNA upstream 70070 21045825 ~ 21049976 (-) True LOC122325251
TU207582 lncRNA upstream 107539 21083294 ~ 21083559 (-) True G140592
TU207583 lncRNA upstream 114229 21089984 ~ 21090943 (-) False nkx2.2b
XM_043218874.1 mRNA downstream 3266 20945637 ~ 20964922 (-) False cd109
XM_043218873.1 mRNA downstream 3266 20945637 ~ 20964922 (-) True cd109
XM_043218861.1 mRNA downstream 210454 20745202 ~ 20757734 (-) True hmbox1b
XM_043218863.1 mRNA downstream 210455 20745202 ~ 20757733 (-) False hmbox1b
XM_043218862.1 mRNA downstream 210455 20745202 ~ 20757733 (-) False hmbox1b
XM_043219541.1 mRNA upstream 104049 21079804 ~ 21082714 (-) True nkx2.4b
XM_043220497.1 mRNA upstream 113649 21089404 ~ 21091008 (-) True nkx2.2b
XM_043219327.1 mRNA upstream 178630 21154385 ~ 21168059 (-) True LOC122324706
XM_043219167.1 mRNA upstream 274993 21250748 ~ 21256606 (-) True tram2
XM_043219157.1 mRNA upstream 283778 21259533 ~ 21264967 (-) False xkr5a
TU207179 other downstream 905211 20061602 ~ 20062977 (-) True G140277
TU207099 other downstream 908585 20057624 ~ 20059603 (-) True G140227
TU207100 other downstream 909689 20057624 ~ 20058499 (-) False G140227
XR_006247245.1 other downstream 1352986 19601532 ~ 19615202 (-) False trim54
TU206747 other downstream 1664220 19300376 ~ 19303968 (-) False angel2
TU207613 other upstream 222955 21198710 ~ 21278741 (-) True G140616
TU207887 other upstream 533874 21509629 ~ 21512353 (-) False LOC122324936
TU207950 other upstream 756791 21732546 ~ 21741004 (-) False batf
TU207987 other upstream 865358 21841113 ~ 21841468 (-) True G140883
TU207994 other upstream 870051 21845806 ~ 21846917 (-) False LOC122325102

Expression Profile