Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_043220497.1 |
| length | 959 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 2 |
| gene id | nkx2.2b |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_056718.1 |
| NCBI id | CM032087.1 |
| chromosome length | 27616869 |
| location | 21089404 ~ 21091008 (-) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0021508 | floor plate formation | biological_process |
| GO:0021514 | ventral spinal cord interneuron differentiation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU207582 | lncRNA | downstream | 5845 | 21083294 ~ 21083559 (-) | True | G140592 |
| XR_006247273.1 | lncRNA | downstream | 39428 | 21045825 ~ 21049976 (-) | True | LOC122325251 |
| TU207496 | lncRNA | downstream | 92723 | 20996366 ~ 20996681 (-) | True | G140522 |
| XR_006247242.1 | lncRNA | downstream | 93891 | 20992521 ~ 20995513 (-) | True | LOC122324961 |
| TU207404 | lncRNA | downstream | 297703 | 20736588 ~ 20791701 (-) | True | G140449 |
| TU207614 | lncRNA | upstream | 108808 | 21199816 ~ 21203969 (-) | False | G140616 |
| TU207612 | lncRNA | upstream | 109629 | 21200637 ~ 21201961 (-) | True | G140615 |
| TU207635 | lncRNA | upstream | 155982 | 21246990 ~ 21247465 (-) | True | G140635 |
| TU207638 | lncRNA | upstream | 166382 | 21257390 ~ 21259521 (-) | True | G140637 |
| TU207706 | lncRNA | upstream | 340798 | 21431806 ~ 21432094 (-) | True | G140683 |
| XM_043219541.1 | mRNA | downstream | 6690 | 21079804 ~ 21082714 (-) | True | nkx2.4b |
| XM_043219753.1 | mRNA | downstream | 113649 | 20968188 ~ 20975755 (-) | True | crnkl1 |
| XM_043218874.1 | mRNA | downstream | 124482 | 20945637 ~ 20964922 (-) | False | cd109 |
| XM_043218873.1 | mRNA | downstream | 124482 | 20945637 ~ 20964922 (-) | True | cd109 |
| XM_043218863.1 | mRNA | downstream | 331671 | 20745202 ~ 20757733 (-) | False | hmbox1b |
| XM_043219327.1 | mRNA | upstream | 63377 | 21154385 ~ 21168059 (-) | True | LOC122324706 |
| XM_043219167.1 | mRNA | upstream | 159740 | 21250748 ~ 21256606 (-) | True | tram2 |
| XM_043219157.1 | mRNA | upstream | 168525 | 21259533 ~ 21264967 (-) | False | xkr5a |
| XM_043219158.1 | mRNA | upstream | 168525 | 21259533 ~ 21264947 (-) | True | xkr5a |
| XM_043220543.1 | mRNA | upstream | 174407 | 21265415 ~ 21274238 (-) | True | prdm1c |
| TU207486 | other | downstream | 113654 | 20973404 ~ 20975750 (-) | False | crnkl1 |
| TU207179 | other | downstream | 1026427 | 20061602 ~ 20062977 (-) | True | G140277 |
| TU207099 | other | downstream | 1029801 | 20057624 ~ 20059603 (-) | True | G140227 |
| TU207100 | other | downstream | 1030905 | 20057624 ~ 20058499 (-) | False | G140227 |
| XR_006247245.1 | other | downstream | 1474202 | 19601532 ~ 19615202 (-) | False | trim54 |
| TU207613 | other | upstream | 107702 | 21198710 ~ 21278741 (-) | True | G140616 |
| TU207887 | other | upstream | 418621 | 21509629 ~ 21512353 (-) | False | LOC122324936 |
| TU207950 | other | upstream | 641538 | 21732546 ~ 21741004 (-) | False | batf |
| TU207987 | other | upstream | 750105 | 21841113 ~ 21841468 (-) | True | G140883 |
| TU207994 | other | upstream | 754798 | 21845806 ~ 21846917 (-) | False | LOC122325102 |
