RNA id: TU207614


Basic Information

Item Value
RNA id TU207614
length 531
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G140616
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21198710 ~ 21278741 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cacgttttaaatgcaaaacagaagCGTTTTCATTAACTGCTCACACCCCACTGTGTATATTGGGTGTATATGAAGATGACATGTAACACTGCAGCCCAATGGGCGCGCGCTCACACGTGCACTCTCTCTTTGATCGCGTCGGTCGCGGAAGTTCCCGCGAAACAATCTGTTACAATGTCTCACATATTTAATCGGGAGTGAAATAACCCCGCGCATATGTCGTCTGTTCAGATCGCCCTACAGAGGCCCCAAAATCCAATGAGACAGTggttgaaagagagagagagtgcgagAAGGAACGAGTTTGGAGGAAGATCCTGACTCTCGGATGGTCTGTTCTGACACGTGTCATTCGCGTCGCACTGAGGGCTTCAGGGAGtacttttttgtactttttgggTTTCCTCACACTCTGTGTCCGTATGAGTGGTGGCTCAGTAGTCCGCTGCGTATTCGGTTCCGTGAAGGCCACGGCACACCAGGGTGAACTCCTTCACAATGTCTTTCACTCGCCGCTTGTTCACTCGCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207583 lncRNA downstream 108873 21089984 ~ 21090943 (-) False nkx2.2b
TU207582 lncRNA downstream 116257 21083294 ~ 21083559 (-) True G140592
XR_006247273.1 lncRNA downstream 149840 21045825 ~ 21049976 (-) True LOC122325251
TU207496 lncRNA downstream 203135 20996366 ~ 20996681 (-) True G140522
XR_006247242.1 lncRNA downstream 204303 20992521 ~ 20995513 (-) True LOC122324961
TU207635 lncRNA upstream 43021 21246990 ~ 21247465 (-) True G140635
TU207638 lncRNA upstream 53421 21257390 ~ 21259521 (-) True G140637
TU207706 lncRNA upstream 227837 21431806 ~ 21432094 (-) True G140683
TU207710 lncRNA upstream 230975 21434944 ~ 21435469 (-) True G140687
TU207711 lncRNA upstream 231828 21435797 ~ 21436058 (-) True G140688
XM_043219327.1 mRNA downstream 31757 21154385 ~ 21168059 (-) True LOC122324706
XM_043220497.1 mRNA downstream 108808 21089404 ~ 21091008 (-) True nkx2.2b
XM_043219541.1 mRNA downstream 117102 21079804 ~ 21082714 (-) True nkx2.4b
XM_043219753.1 mRNA downstream 224061 20968188 ~ 20975755 (-) True crnkl1
XM_043218874.1 mRNA downstream 234894 20945637 ~ 20964922 (-) False cd109
XM_043219167.1 mRNA upstream 46779 21250748 ~ 21256606 (-) True tram2
XM_043219157.1 mRNA upstream 55564 21259533 ~ 21264967 (-) False xkr5a
XM_043219158.1 mRNA upstream 55564 21259533 ~ 21264947 (-) True xkr5a
XM_043220543.1 mRNA upstream 61446 21265415 ~ 21274238 (-) True prdm1c
XM_043219127.1 mRNA upstream 101741 21305710 ~ 21315327 (-) True hadhaa
TU207486 other downstream 224066 20973404 ~ 20975750 (-) False crnkl1
TU207179 other downstream 1136839 20061602 ~ 20062977 (-) True G140277
TU207099 other downstream 1140213 20057624 ~ 20059603 (-) True G140227
TU207100 other downstream 1141317 20057624 ~ 20058499 (-) False G140227
XR_006247245.1 other downstream 1584614 19601532 ~ 19615202 (-) False trim54
TU207887 other upstream 305660 21509629 ~ 21512353 (-) False LOC122324936
TU207950 other upstream 528577 21732546 ~ 21741004 (-) False batf
TU207987 other upstream 637144 21841113 ~ 21841468 (-) True G140883
TU207994 other upstream 641837 21845806 ~ 21846917 (-) False LOC122325102
TU208103 other upstream 908633 22112602 ~ 22113044 (-) True G140972

Expression Profile