RNA id: TU207870



Basic Information


Item Value
RNA id TU207870
length 553
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id LOC122324488
representative False

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21437692 ~ 21477858 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CACAGAAACCCTCAACCTCTGAACTGAGAGTCCTGTCAGAACATGGCTGCGTCTCACTTCTTCACTTCTCGCttgtaaacaataaatatataatggtaaaaaaagagataataatcccaaataaaagttaaatgcaTAACAAATCGGTTCATTGCAAACAATATGCCGTAAACGTCAGCATTATAAACGTTTTTGAGTGGATTTGAGCTGTTTGGACTAATTGCCCACAATCCCTAGAGCTACAGAAGATGTGGTTTAAAAGAGAGGCTCAGACATTTTCCCGAAAATTTTCTTTCGcgttctacagaagaaagaaagtcgtAGGAAATGGGAAAGAcgttgaggATCTGACCAACGGCACCGACTTGACCAACAGAAACACATCCAAATGTGCCCAGGGCTGCGAGTCCTTCagaagatacacacacacacacacacgggaggCGCGCTGACAGATGGATTCCTGCTGTCGGAGAGTAACGTGACCTTATGAAGGATTCAAGCATCATGTATGAGCAGTGGATGAATATTACATAAAGCGTTTGGAAAGCTT

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU207711 lncRNA downstream 2209 21435797 ~ 21436058 (-) True G140688
TU207710 lncRNA downstream 2798 21434944 ~ 21435469 (-) True G140687
TU207706 lncRNA downstream 6173 21431806 ~ 21432094 (-) True G140683
TU207638 lncRNA downstream 178746 21257390 ~ 21259521 (-) True G140637
TU207635 lncRNA downstream 190802 21246990 ~ 21247465 (-) True G140635
TU207882 lncRNA upstream 4760 21482618 ~ 21483300 (-) True G140808
TU207879 lncRNA upstream 19446 21497304 ~ 21505642 (-) False lin28b
XR_006247240.1 lncRNA upstream 29386 21507244 ~ 21512483 (-) True LOC122324936
TU207896 lncRNA upstream 71226 21549084 ~ 21552231 (-) True G140817
TU207906 lncRNA upstream 89775 21567633 ~ 21568360 (-) True G140826
XM_043219127.1 mRNA downstream 122940 21305710 ~ 21315327 (-) True hadhaa
XM_043220543.1 mRNA downstream 164029 21265415 ~ 21274238 (-) True prdm1c
XM_043219157.1 mRNA downstream 173300 21259533 ~ 21264967 (-) False xkr5a
XM_043219158.1 mRNA downstream 173320 21259533 ~ 21264947 (-) True xkr5a
XM_043219167.1 mRNA downstream 181661 21250748 ~ 21256606 (-) True tram2
XM_043219715.1 mRNA upstream 5734 21483592 ~ 21505655 (-) False lin28b
XM_043219714.1 mRNA upstream 5734 21483592 ~ 21505560 (-) True lin28b
XM_043219388.1 mRNA upstream 38921 21516779 ~ 21530446 (-) True rab10
XM_043220050.1 mRNA upstream 152412 21630270 ~ 21639546 (-) True gnpat2
XM_043220238.1 mRNA upstream 162471 21640329 ~ 21655564 (-) False lpin1b
TU207613 other downstream 159526 21198710 ~ 21278741 (-) True G140616
TU207486 other downstream 462517 20973404 ~ 20975750 (-) False crnkl1
TU207179 other downstream 1375290 20061602 ~ 20062977 (-) True G140277
TU207099 other downstream 1378664 20057624 ~ 20059603 (-) True G140227
TU207887 other upstream 31771 21509629 ~ 21512353 (-) False LOC122324936
TU207950 other upstream 254688 21732546 ~ 21741004 (-) False batf
TU207987 other upstream 363255 21841113 ~ 21841468 (-) True G140883
TU207994 other upstream 367948 21845806 ~ 21846917 (-) False LOC122325102
TU208103 other upstream 634744 22112602 ~ 22113044 (-) True G140972

Expression Profile


TU207870 Expression in all Baseline Samples

Bar chart with 10 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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TU207870 Expression in each Bioproject

Bar chart with 2 bars.
TU207870 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.