RNA id: TU207879



Basic Information


Item Value
RNA id TU207879
length 1236
lncRNA type sense_over
GC content 0.37
exon number 3
gene id lin28b
representative False

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21483592 ~ 21505655 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


agagcgaatgtgcgagggagggaaagagagaggggatAGGAGATGTTAAAAGAGACATGACAAAATATCCAAAAAGGAGACGCACGCCGTACCATGCGCGCTAAATTTGTGCCCGCTGGAAATCGGGATGTCGGATCGACGGTGACGCGCATCACCCCATTTCACGGAGGAAACGATTTCGCTGGAACTTTGGAACGGAGGGTCCGCGGGGAAACATGGCCGAAGGAGGGCCGCGCAAAGGTGTCGGGTCGCCGCAGATTCTGGCCGGCTCGGGTTACTGCAAGTGGTTTAATGTCCGCATGGGGTTTGGATTTATATCGATGACCAGCAGCGAGGGGAAGCCAGTGGACCCTCCACTAGACGTGTTCGTTCACCAAaGCTCGGTCTCTTCTGCATCCTGCACTTTTATTCTCCATTTCTCCATTTGTTCAGTTCTTCATTTCTCCATCTCAACACAAGCTGCAGGTCACATGACTTCCTCCTTCAGCCCTGCCCATATATGGAGTTAGTGTGTGGGCGGAGCCAGCTGCTGATCTGACACAAACAAACGCTCACTTTCCAAGAGTTCAGTCACTGCTTTGTAGCACTGAAATCCAATGATgagtttttttcaaaaacattttttgccatgtattttttttattttttattctatgataatgttaatttttttttcattttattgtatttttttaaataatttaatttaataatcttaTTAATGCTTGACTTGGTTAATGTTTGAATTGGttcttgaattaaaaaaaactgtttattattttttttaatagtttgtggTCTCATAAGACATGATGAAAATCATAAACTCACAAATGAAGTGTCGTTTAAATTAAGTgtgttaaataaagaaaacatttgtcgAGAGcacaaatgttaaatgtaaaaatgagttCTGATTAGAATTGTTTAAAATCTCAAGTCAAATGGTTTGGACAGATAAGAAAAACGCAACCTAAACCAGATACAAAAAAAGacttcttttactttttttaaaatgtaaaaaaaatttttttttttttataagcaactgtttgtttgcttttcaaaaaaaaaagcaagctttGATTAAAGACAATACATTACATCGATgcgttttattaaaataaataaacacaaaaaagtacCAAATCATGACAAACAAACATAAGCTGTTGTGTTGgttctgtttctgtttattcagtttcttttctgtgcatgttttattttcaagtttCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU207882 lncRNA downstream 14004 21482618 ~ 21483300 (-) True G140808
TU207870 lncRNA downstream 19446 21438267 ~ 21477858 (-) False LOC122324488
XR_006247184.1 lncRNA downstream 19474 21437692 ~ 21477830 (-) True LOC122324488
TU207711 lncRNA downstream 61246 21435797 ~ 21436058 (-) True G140688
TU207710 lncRNA downstream 61835 21434944 ~ 21435469 (-) True G140687
XR_006247240.1 lncRNA upstream 1602 21507244 ~ 21512483 (-) True LOC122324936
TU207896 lncRNA upstream 43442 21549084 ~ 21552231 (-) True G140817
TU207906 lncRNA upstream 61991 21567633 ~ 21568360 (-) True G140826
TU207904 lncRNA upstream 71196 21576838 ~ 21671924 (-) True G140824
TU207881 lncRNA upstream 192778 21698420 ~ 21699275 (-) True G140807
XM_043219127.1 mRNA downstream 181977 21305710 ~ 21315327 (-) True hadhaa
XM_043220543.1 mRNA downstream 223066 21265415 ~ 21274238 (-) True prdm1c
XM_043219157.1 mRNA downstream 232337 21259533 ~ 21264967 (-) False xkr5a
XM_043219158.1 mRNA downstream 232357 21259533 ~ 21264947 (-) True xkr5a
XM_043219167.1 mRNA downstream 240698 21250748 ~ 21256606 (-) True tram2
XM_043219388.1 mRNA upstream 11137 21516779 ~ 21530446 (-) True rab10
XM_043220050.1 mRNA upstream 124628 21630270 ~ 21639546 (-) True gnpat2
XM_043220238.1 mRNA upstream 134687 21640329 ~ 21655564 (-) False lpin1b
XM_043220239.1 mRNA upstream 134687 21640329 ~ 21654016 (-) True lpin1b
XM_043220185.1 mRNA upstream 184776 21690418 ~ 21697694 (-) True fez2b
TU207613 other downstream 218563 21198710 ~ 21278741 (-) True G140616
TU207486 other downstream 521554 20973404 ~ 20975750 (-) False crnkl1
TU207179 other downstream 1434327 20061602 ~ 20062977 (-) True G140277
TU207099 other downstream 1437701 20057624 ~ 20059603 (-) True G140227
TU207887 other upstream 3987 21509629 ~ 21512353 (-) False LOC122324936
TU207950 other upstream 226904 21732546 ~ 21741004 (-) False batf
TU207987 other upstream 335471 21841113 ~ 21841468 (-) True G140883
TU207994 other upstream 340164 21845806 ~ 21846917 (-) False LOC122325102
TU208103 other upstream 606960 22112602 ~ 22113044 (-) True G140972

Expression Profile