RNA id: XM_043219714.1


Basic Information

Item Value
RNA id XM_043219714.1
length 6054
RNA type mRNA
GC content 0.42
exon number 4
gene id lin28b
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21483592 ~ 21505655 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACGCCGTACCATGCGCGCTAAATTTGTGCCCGCTGGAAATCGGGATGTCGGATCGACGGTGACGCGCATCACCCCATTTCACGGAGGAAACGATTTCGCTGGAACTTTGGAACGGAGGGTCCGCGGGGAAACATGGCCGAAGGAGGGCCGCGCAAAGGTGTCGGGTCGCCGCAGATTCTGGCCGGCTCGGGTTACTGCAAGTGGTTTAATGTCCGCATGGGGTTTGGATTTATATCGATGACCAGCAGCGAGGGGAAGCCAGTGGACCCTCCACTAGACGTGTTCGTTCACCAAagtaAGCTGGTGATGGAGGGCTTCAGGAGCTTACGGGAGGGCGAGCAGGTTGAATTCACCTTCAAGAGGTCGAGTAAAGGTCTGGAGTCGCTCAGGGTCACGGGGCCCGGTGGGGGCCCATGCTCGGGCAGTGACCGACGCCCCAAAGGCAAGGCCCCGCCCCTCAAACGCAAACCAAAGGGAGACCGGTGTTACAACTGTGGAGGTCTGGACCACCACGCTAAAGAGTGTGGCCTTCCGCCCCAGCCAAAGAAGTGTCACTACTGTCAGAGTGTCACGCACATGGTGGCCCAGTGTCCCCACAAGAGGGCGCTGTCCCCATCCACGTCTCAGGACCCCCAACGCCCCTCCACCTCCGCTCAGTCCCAGGAAGAGGGTAGTCGGTCGGGCTCGTCGTCCTCTCCGGAGGAAGCATCTCAACGGGGCAGTCACTCCCAGCACTGGAGGAAGAGCCGGGACTGAAAGGTTCCTCATCCAGACGAAGCCCGGACCCGAAATCATCTACCTCACATGGCCGGGTCACAGAGGAgaccctccctccctccctcccttcccGTGCAGCTATGGTATCAGCCGATGGGGGTCATGCGTGTACATGCGTGTTCTCACTGAGCAATTACAACAAACTCTGCgactggcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgcaaATGAGCGAGAGTGTGTTTTGAAGTACTAAAAATCACAAGGCGAAATAGGTTACACTGAAAAACATGAACCAGTGTTTTAAAAACTCTCGCATGAAGTCAAGTTTGCAAGCCATTTGACCTCCATCATAGTAAAATGGGTTATTAATTGAGAGAAAATGTTTGCAGTGTGCTTCAAAAGTGATGTCGGTGAACTTGTTTCGAAGGAAAGGCAAGTTAGCATGTTATTTTTGGGAGAACGTGTTCATGTTAAACATATAGTTCAccttaaaaattcaaatttgtTGAAAATTTACTCAGGCCGTTTGAGATTTAGATGAGCTTCTTCATTagaacggatttggagaaatgatTTCACTTGCTCAGTGCCgtttcctctgcagtgaatgggtgccgtcagaataagagtccaaacagctgataaaaacatcacagtaatgcACACCATAACTTGCGAAGCAAAAATCTGtgcgtttgtaagaaacaaatctatcacaaagacatttttaaacctCAAGCAATTGCTCGTCTCCTCCAGTgaaaatgaggcatttgtttttttgaaaacgtggcagcttttcacttcacaagatgttcaGTGACAGACTGTGGCGTGGTGTGAATTATTGCggtatttatttaacagctgttcggactctccttctgacggcacccattcaccgcagtgCATCCACTGTTGAGAAAACGATGTAACgttacatttctctaaatctttTGACATTTTGGGTGGCCTGATGGTGAGTCCATTTTCAGCGAAGACGAGGAACATGCATTATCGGAGTGAAAACGATCACGTtagatttcatgttgactttaaaccAGATCCAGACATAACGACAAAGAAAACTTTGGGTTCTCCAGCATTTTGAATCGCTCTCAATCATTTCCCGCGGGAGCCCGGCACAGATTTGTTATGGCTGGGGGTGTATAGTCAGCGCGCTATATCCtatcattaacattattatgggaTACTGAAAtctgaatcagttttttttttgtgtgtgtgtgtggatggctCTCAGATCCGGTGCTGTCAGCCAGAGTTTGAGATTAGACTGTAACAGTTGAAGACTAAGAGCTACATTAACGTCAGCCAGAGAGGACTAACTAACTGATTTAAACGTATTGCCATTGTTTAGCTGCAGACTGTTCCACAGCTTACGGTGATAAtttaaggcattaatatattgtgaaatattataaatgttaaaagtgtaatttatgtAGAGCACATAGGTAGAGGAAGTTTTCGATGCCGTTTGATTtgatctctctctcctccctcacGCAGCTTTTGGAGGAAACGATGCTGCGTTCAACGGTGTCGGAATTACCGTAACGATAAAGCTTCTTTTCACTATagaatatgaagtaaaaaaggtaaaactcTGGCTTTTAATGGCAGAAGAGTATGAGTAACGgttgcatttactttaaaaatgttgttatttcaTTACGAGTTTCACAAAAGCCTTATTTTCTCTCGCATCCCGTGTTAAATCATCgtgttaaaaaactaaaatgacagtGGCCTTAAAGCGATTTCTCTGTCCTCGGAAATGTTTCAAGAGTGCATACTGATGAATTATTGTAACCGTTGGACGGTTATTGAAGCGTGGACGGTCAACAACAGCCGCACACGAACTGATCATCAACGCAGCCATCTGTTGCTTTGCTCTTCAGTAATTTGCCGCTCTGTTTGTTCCGGAAAGCAGCTAATAGACCTTAGTCGGGTTAGTGCCGCGTTTAATTTCTGACAGGAATGAAAACGAGGAGGCAGGCGAGGGGCCGAAGTGGATTGTACTGTAGTTTAACAAAATGCCAAATGTCCAactgacaaaatatatttacgttAGAAACTTTCAGGAGACAAAAATGCCATGAAAGCGTTTGAAAGAAGTGCACTGCGAATTTATGCGGCTGGCTGTAGTCTATTCGGCGCAGACTCGTTTTAATTTagagatataaaaaaatctatatagcGTCTAACCCGACTAATGTCTAAAAATGCGCAAGCAGAGCTGAAAAGCAGTTAAAAAAGTGGCGTACAGTATTTTCAGTTGATGAAATTTACTTCATCACACtgtaagcattttttaaatgccaacATGCGCTTgatttttatacatacatacattaaagACATCGATTGTGTAAATTTAAACTAATACGAAACATTGTTATTGCTCTTAAGGGccacacttttttttgctgtgtgcaTGTGCTTCCGCTTGTCATTTACGGTAACTCCGACATACTGTAAACACAGCATTATACCAACAACTCCACAGCAACATTTAAGTCCAGAAGTCAGCAGCTGACTGACGTGTATTTttgatctttttgttttcagtgattaatattttgtttgtcaAAGACTTGTAGAATATTGACTAAAATACAGTCTAGCCGTTCTATTCTTGTCTTTACGAAGCTGACCATTTAAGATTCATCAACTCAAAATCACAGTCTTGTGTTCATGCTAATGTGCTCCTAAACAAGTCGTTACACCCTTATGCGGCGCTTATGTTgcatactacttttttttttttttgtcacagggtccagttaaaaaaaaaaaaaaaacgcttgcTTTTTCTCCCATTCAGCTAATGAATGTAGATGAACTGAAGCCTTAGATAGATctgatcatttttaaagctgCTGGCAGAGATGTGAAAGTTATCTGCTACAATCATCCATTGAACAgtgaaaaactgaacaaaagtgCACTTGAACAAAGTAAGCATTGTTTACCCAGAATGCCACGCTGTGGAGGTTTGCTATTTAATGTCTCGAAAGTCATTGAGAGTTCCAGTGAAGTGACTGCCAGCAATAATTTCAGACCCTTTTCATTCTGTTGACCTTAAATCCGAGAGAAGATTTTCAGTAACACAAAAGGGTTTATAGAGTGTTACGGCAGTGCTTCGTCTCCTTGACGTCTCTCGTTTTGTCCTCATCTGGAGGGAATGGGAGGGTGAATCTCAAGAAACACGGTGGTCATATTTTACCTCAAAATAAAAGAGTTCGTAcactttttcaaaagaaaataaagcatatttaagatgttttaagaAGTTTTGTTATGCACTTCTGCTCACTTTAATgtcaaaaaatgttattctcattactgtaatatgcagaaaatgtacttaagtaatataaatatttaatttctaaagtGTATATACTTCTTGGTAGTGttgctgatttaaataaaatcatttaattgtaatatctTTCAGTAAAACAATGAATTACAGTAATGTTAATACATGagaatattcattattattttttaatcacagtATTGACAATTTGGAGTGAAGATAAGTTATTTTTCTCCTATTCTACTAAAATTCTCCTATTttattcagtgctttgatacaatctgtgttgttgaaAACGCTGtataaataagtgtttttaatcGTAATTTCCTTTATCTCTGTAGGGTAAAATATGACTTTCGCATGTTTCTGCGAGATTCATCAGTGGGGCCAATCAAAAAACgactttttttctgtagatTTGATGCTTTGAGCAGTCTTAAGTTTCTGCATCTCGTCACatgagcaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgtgcgtgtgtgtgcgtacgCACTCAGGCAGAGATTTCAGAAACACGAGTGCTGCCTCACATTATGACTTGAACTGGCGCTCATCCTCCACTCGAGGTCCTTAAAGACAAGACGACGCCTGACCATACTGAATGTGTAAAAGATTCAAAGTGAGCTTACATGCCTGTTCCCAGCACGATGGACGTTCCTATCCTGTGTGTCGACAAATCAGACGGCGTGGTTCCCATGGAGGGCGTAAACTAACTGTGTGTGTCTTGGTATAGACCCTTATACCAAAGACTGGCTGCGTTTGAAGGCATTagacgtgagtgtgtgtgtgcgtgtgtgtgtgtgtgcgcgcattcGTATTTAATCAAGTGCACAGACGAAGAAAAACAATCTGAGAGAAAGAAACCGACCAAATGACAGACATCGATAGCACAGACTCAGATCCCAAACCTCATACAGAtttatacagtgtatttttgtacatttctacCCACAATTCTTCTCAGGATGAACTTCTCTCAGGGAACGAACCAAATAAGTGTATTTGATGTTATTCTGTAGGGAAGCGTTGACCATTAACTGAACCTATCGACTGTTGCTCATCACTCTCGGTCTCGTATGTTAGAACTACCTCCTTCAGTTACACATAGTCATCCCTTTCCGTTGGAGTCTGTTAGTTTTTGTTAGTCTGAGaaagtaataatttgctttgtgTTTACACAGAAGTCTacctcattttctctcttcatCTCCAGTTCAGCTCACTCTGGGGTCAGTTTGAGTTTTATCTTAACACTTCTGCTGAAATTAGGACACCTCTTAgtgttattttctctttttatgtcGTTCAATAGAAATCGCCtgctcatttctctctcttttatgtTTAGAGTAACTCAAGTAGTTTTTGAACGTGTAACGGTTCAGCGTAAATCTAACACAGACTCGCCCAGCATAAAACGCTCAAAATGTTCTCTGTGACAGCTCAGTGCAAAGATTGTTTCGcattttgtgcctttttttattgttatggcTAGACTTTTAATTGGGAGGaagtatgttgttgttttggggCATTAGTTGCTATCAATatcattccatttttttttttttttggtaatatcAGTACTAGAGAAGGACTTTAAAGTGCCACTATTATGGATTTTGTAAATAAGTTGTCATGCAGTAAGTAAATGAGTCAGCCGTTTgaggtcaaaatgaaacatcagCGTATTGCCCTCCACTTGTTGGTCTTCtcgtgttggtctgaatgaaaatgctaaattctTTGCCACTAGTTGGAGCGTCTGGTgagttaaaagctcacaaataTAGCTGTAACTGAAATAGGCCCATTACTggagggtttggaaaaattaatcattgaatgaattgttgaataacccataataggggcactttaatacattggcagcattttata

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K18754 LIN28; protein lin-28

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207882 lncRNA downstream 292 21482618 ~ 21483300 (-) True G140808
TU207870 lncRNA downstream 5734 21438267 ~ 21477858 (-) False LOC122324488
XR_006247184.1 lncRNA downstream 5762 21437692 ~ 21477830 (-) True LOC122324488
TU207711 lncRNA downstream 47534 21435797 ~ 21436058 (-) True G140688
TU207710 lncRNA downstream 48123 21434944 ~ 21435469 (-) True G140687
XR_006247240.1 lncRNA upstream 1684 21507244 ~ 21512483 (-) True LOC122324936
TU207896 lncRNA upstream 43524 21549084 ~ 21552231 (-) True G140817
TU207906 lncRNA upstream 62073 21567633 ~ 21568360 (-) True G140826
TU207904 lncRNA upstream 71278 21576838 ~ 21671924 (-) True G140824
TU207881 lncRNA upstream 192860 21698420 ~ 21699275 (-) True G140807
XM_043219127.1 mRNA downstream 168265 21305710 ~ 21315327 (-) True hadhaa
XM_043220543.1 mRNA downstream 209354 21265415 ~ 21274238 (-) True prdm1c
XM_043219157.1 mRNA downstream 218625 21259533 ~ 21264967 (-) False xkr5a
XM_043219158.1 mRNA downstream 218645 21259533 ~ 21264947 (-) True xkr5a
XM_043219167.1 mRNA downstream 226986 21250748 ~ 21256606 (-) True tram2
XM_043219388.1 mRNA upstream 11219 21516779 ~ 21530446 (-) True rab10
XM_043220050.1 mRNA upstream 124710 21630270 ~ 21639546 (-) True gnpat2
XM_043220238.1 mRNA upstream 134769 21640329 ~ 21655564 (-) False lpin1b
XM_043220239.1 mRNA upstream 134769 21640329 ~ 21654016 (-) True lpin1b
XM_043220185.1 mRNA upstream 184858 21690418 ~ 21697694 (-) True fez2b
TU207613 other downstream 204851 21198710 ~ 21278741 (-) True G140616
TU207486 other downstream 507842 20973404 ~ 20975750 (-) False crnkl1
TU207179 other downstream 1420615 20061602 ~ 20062977 (-) True G140277
TU207099 other downstream 1423989 20057624 ~ 20059603 (-) True G140227
TU207887 other upstream 4069 21509629 ~ 21512353 (-) False LOC122324936
TU207950 other upstream 226986 21732546 ~ 21741004 (-) False batf
TU207987 other upstream 335553 21841113 ~ 21841468 (-) True G140883
TU207994 other upstream 340246 21845806 ~ 21846917 (-) False LOC122325102
TU208103 other upstream 607042 22112602 ~ 22113044 (-) True G140972

Expression Profile