RNA id: XR_006247240.1


Basic Information

Item Value
RNA id XR_006247240.1
length 3079
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC122324936
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21507244 ~ 21512483 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTAAAATAAAGCACACCGACCCAGAACGCTACTCTAGCAagtaaagcaataaaaataaaaaaaaacagttttttttaaacatccgTAAAGTTTCATGTGGCATCTGCGCATGGCAACTAGAGACACTCGCGCGCTCTCTATGGAGGATGCGGCGAGCTGAGATGCTTAACGGAACCGGGAGAGCTCCGCCGTCgcccgccgccgccgccgcacAATTCCGCCTGCAGACATCAACACGGCTGCggaatacacacatacacacccgtGGTCCTGACGCCCCGGTAATGGCGGATGAAAGGTATTTGACGGGATATTTTGTCGCGAACGGGGATTGTCCGAAGTTTtctaaaaagtttcattttattacCCACACCAATCTCGATTTGAAACTTCAAGATCTCCTCGCATCACACACAGGGTCAGACACGGAGCGCGTGCAGCATGGCCGTGCAATCCATTTCAGGTGAGTGAGACATTTATAAAGCGCGTCCTCTAGGAATGAAGGCGAGCGCGGATGTCCTCTCCGTGAGCGCACGGACATTTCAGACGCTACCTGTTTGAACGGTCTGAGAGCTCAACCTGTACGAAACCGTGCCGCGATCGCGTAACGTGGCCGTTTAATACGATTAAACTATTTAAACGGCGGGGAAATGCGCGGTCAGGTCCTCTCACAGGGAGCGACCGAAAGGCAGGAggagaggaaaagagtccagaatgCCTCTTTCATACTTCCGTTCGACGTCATGATTTAATTGTGACGTAATAAAGGAGCGTTCAGGCGGAATCAGCCGCCAACAGAAATAACCCACGTTAGATCTTATTATTTTACAGGGAACGCTCTTGCaagctattaaaatgtttaggaTGCGTTTCATTGTTATCTGTAGAGTAGGTAGCTGTTTTGCTGTAAAGATAGCCGATGTGAAGgcagttcatttttattcatttatttttttgcaacgACTAACTCTGATTAAATCGTAGCGAATGAACGCAAGCGTTCGGTTGTGTTTAACGGGCGACTTTTACGTACCGAAATCGTGGAGACAGCACTTATTTCGGTTGTTAAAAATCGTTAGATGCGCAGCGCGCTGAAACGCAGTCCTTCGCGTTTTTAAGCAGAAATAAACCTCACAATAAACCGTAAATCCAACAAcgttttaaaacgtttttgcaGTTTCGTAGAAACGAAAAACACAGCCTAAAACAGCCGAAACGCAAAAGAAACTACTGATCGTCTGCGTGTCTCGAACGTGTCTCTGTCTTTtgtgtgtgattaaaaaaaatgtgcccAAACTACGATAAagactaatattttaaactatgcCCGAGCTGTTAAAATTAATACACTGCATAGGAATTTTGcagaaatcctttttttttttgaagatttctattttaactcTTCGGTTCatcaaagttttaaaatgaacgtGATTGGGTCAGGActgttttaaaaactaattataattcAAACATGCGTGCGTTTCGAATAGGAGAGGTCCTTACCTTATAATGAAACCTCAATTGTATCGGTCTTTGTGAGAACAATTGATGTAGCAGCAGCCTTCGCATGCAAAACCGAGAATGGAGCGTTTAAAAATACCCTCCTCATCCTCGATATTCACCTCTGATTATTACCGAATCGGATTTTACGCAATCGGGTTTGCGTTGGCTTCGATCGGAGAATTTCGAAGAGACGGAGGAATTGAACGAATGCGGCGTTAAACccaaagaaagaagaagagctgaaTAAACTCTGCGGACTCTATTGACAACTATGCGTTTCCTCGGGGGTTCGGCTGGGTGGGGGCGGGCGAGGTGGAGGTATGGCGGGTCAGAACTGCTCAATACATCCAAACAGACCCTCCGAGCCGTGGATTTGGTAAGATCTGCGAACCTTCTGCTGCGAGCTCAACGCATCGGTGGCTTCAGCTGGGATCTCGTCTCCTAGGGATGTTGACTAAATGATTTCCAGTGCCTTATCTTAATTGAagattaaaatgttcatattcaCTCTGGAGGGATAGCGTAAATGCATAGCTCGCCTGAAGCCCCAAGTGAGAGTTTTTAGGTTTCATCTCATTCAGTACGTGCTCTTCtaagtgatttgttttttaaatgaagagcttattaaagaaaatgtcgATTGGTGAACCGTTTAGCATTTCAATAGCAACCAGTCCTGATTTAAAAGACAATTTCACATGTGGGAAACGGTCTTCTGGTGATTGATTATGAGTTAGAATTTGAGGAATCAGTGTCTAAAAGTTTGGTCtgctcatttaaaaagaaaacgagagattaaacttttaaagtctttaaaactctCGCTAATAACGAGTTCAGGGTTGTAACAATTTAACTAgttatgcaatatttatgtttagtaTACGTACTACTGTTTAATCCCCTTAGTGCACCTTTCTGCAAGTACACTGAATAGAATTGCAAAGATATTGTGTCGTGCATTTAgtcttagttttagtttaaaatttgGGCTGTCGGTCTATAATCGATAGCTACATCTACGTGGATTTATCAAAGTTTTTAGAGTGATGTTGTTCAGTCCAGCGTTAAACCCAACGGGTCGAAATCAGATGATATTcgtcttaaataaaaatatgaagttCGAGTAGCCCgcttttctccttttctttttctcaactTCGCATTCACAAGCGTGCCTTCGCCTCAGATCAATATTTCTCAGTGCTGGCGATTTAAACGGCTTTTTCGAGTCACGCGGACCCGTTTCGCGTTTCCCAGCAGACACGAACCACCGAGGAACGTCTTTATTTATCCGTCTGTCCCGGAGCTCGACTCGATGCTTGCGGACTTTAACGGGATCAAACGGGGACATTTAGGGTGTGTCCATGACCTCGTGGGACGTGTTTCCCGGAGCTCGCGGGGGCAGTTTTATGAATGGTGGATGGGAAACCCTCGTGCAGGAAATGAGAAACTCCATAACATCTGACACCGGTGACCAGATCCCCGACCTGCGCCGTAATAGCACGACCACCATCCATCTCTTCCACAcaccagcaaacacacacacacacacacgcacacagcatC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207879 lncRNA downstream 1602 21497304 ~ 21505642 (-) False lin28b
TU207882 lncRNA downstream 23944 21482618 ~ 21483300 (-) True G140808
TU207870 lncRNA downstream 29386 21438267 ~ 21477858 (-) False LOC122324488
XR_006247184.1 lncRNA downstream 29414 21437692 ~ 21477830 (-) True LOC122324488
TU207711 lncRNA downstream 71186 21435797 ~ 21436058 (-) True G140688
TU207896 lncRNA upstream 36601 21549084 ~ 21552231 (-) True G140817
TU207906 lncRNA upstream 55150 21567633 ~ 21568360 (-) True G140826
TU207904 lncRNA upstream 64355 21576838 ~ 21671924 (-) True G140824
TU207881 lncRNA upstream 185937 21698420 ~ 21699275 (-) True G140807
TU207947 lncRNA upstream 215170 21727653 ~ 21768597 (-) False G140859
XM_043219715.1 mRNA downstream 1589 21483592 ~ 21505655 (-) False lin28b
XM_043219714.1 mRNA downstream 1684 21483592 ~ 21505560 (-) True lin28b
XM_043219127.1 mRNA downstream 191917 21305710 ~ 21315327 (-) True hadhaa
XM_043220543.1 mRNA downstream 233006 21265415 ~ 21274238 (-) True prdm1c
XM_043219157.1 mRNA downstream 242277 21259533 ~ 21264967 (-) False xkr5a
XM_043219388.1 mRNA upstream 4296 21516779 ~ 21530446 (-) True rab10
XM_043220050.1 mRNA upstream 117787 21630270 ~ 21639546 (-) True gnpat2
XM_043220238.1 mRNA upstream 127846 21640329 ~ 21655564 (-) False lpin1b
XM_043220239.1 mRNA upstream 127846 21640329 ~ 21654016 (-) True lpin1b
XM_043220185.1 mRNA upstream 177935 21690418 ~ 21697694 (-) True fez2b
TU207613 other downstream 228503 21198710 ~ 21278741 (-) True G140616
TU207486 other downstream 531494 20973404 ~ 20975750 (-) False crnkl1
TU207179 other downstream 1444267 20061602 ~ 20062977 (-) True G140277
TU207099 other downstream 1447641 20057624 ~ 20059603 (-) True G140227
TU207950 other upstream 220063 21732546 ~ 21741004 (-) False batf
TU207987 other upstream 328630 21841113 ~ 21841468 (-) True G140883
TU207994 other upstream 333323 21845806 ~ 21846917 (-) False LOC122325102
TU208103 other upstream 600119 22112602 ~ 22113044 (-) True G140972
unassigned_transcript_2511 other upstream 602555 22115038 ~ 22115120 (-) True trnal-uaa_36

Expression Profile