RNA id: XM_043220634.1


Basic Information

Item Value
RNA id XM_043220634.1
length 1263
RNA type mRNA
GC content 0.43
exon number 3
gene id batf
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21732544 ~ 21741077 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GcagggcgagagagagagagggagtgaagcagagcaagaaagaaagagtgtgaGTATTGCAGTCTCTACTCATTCTTCAGTGGACCGCGATCAGTTCACATCTCTCTTCTAAACACATGCAGTCTCACATAgcctgagacagacagagacagacagatagatagttaaacaggcagagagaaagacaccGGCGGAAGACAGACGCTGAAGGAGGTCAAAGGTTTCACAGGGACTGAAGTGGCATGGCTCAGGGCTCTGACAATAACGACACCAGCTATACCAAATCCCCCTCACCGGGCAATAAACAGGGTTCGACGGATGACGTAAGGAAGGTGATGAGGAGAGAGAAGAACCGCATCGCGGCGCAGAAGAGCCGAATGAGACAAACGCAGAAAGCCGACAGTCTGCACCTGGAGAGTGAGAGTTTGGAGAAGGAGAACGCGGCGCTCAGGAAAGAGGTGAAAAGACTCACAGAAGAGGCCAAATATCTGTCCACGGTCCTGAGCAACCATGAGCCGCTGTGCACGGGCCTGAGCGGTGCGTCCACAGAGCTACTGTACGGCGCTCACCATGGTGcttttcaccagcacatcagcGTGCCTCATTACCCGCTCTGACCAGCAGAGGACGCCGCAGAACCACCGGGTATCCGCCTGTGGGCGACAGTCAATGAACTTTGATTTGAGTCATGAACCACACAAGAGTCATCAGAGGGCACTGAAGTGATCTTACAATCATTTCCTgaatatcagaaaaaaaaaggctgcaGATGTAATGATTTTTGTGGCACTGACATCTGAATAgaatttttcgttttttttctcgTCTAAAGTAAAATAATCCCAGCTCCTTGAACAAAAACTCATGTCTGTAAAATGCAAGCATCTGTAGTGTTAAACGTCGGCTACTGAcacaatgaatgtttttaatttagattttattagaAACCACTCTACTGATTCatatgatcatttatttaattctatttctGTGAAATGTTTATGAGATGACTGGATTCTAAGAAAAATGATTGTTTATCCTGTTCACAAATAATAtgtgtgaatgtttttctattatGACTCATTTAAGATGTTGAATTGGTCAAACATTCTGAATGTACTTTATACACGATTctagaaaagtatttttattctaaACCCTTTGGGATATTTTAAAGTTGTATGAGGCTATATCTCAAATGTGGAGGGAGAAAAAATTTGTACCCGTGATCACCTgaggacaaaataaaaactgtaaaataca

Function

GO:

id name namespace
GO:0045064 T-helper 2 cell differentiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0002320 lymphoid progenitor cell differentiation biological_process
GO:0001816 cytokine production biological_process
GO:0045190 isotype switching biological_process
GO:0042832 defense response to protozoan biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0072540 T-helper 17 cell lineage commitment biological_process
GO:0030330 DNA damage response, signal transduction by p53 class mediator biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09034 BATF; ATF-like basic leucine zipper transcriptional factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207881 lncRNA downstream 33269 21698420 ~ 21699275 (-) True G140807
TU207904 lncRNA downstream 60620 21576838 ~ 21671924 (-) True G140824
TU207906 lncRNA downstream 164184 21567633 ~ 21568360 (-) True G140826
TU207896 lncRNA downstream 180313 21549084 ~ 21552231 (-) True G140817
XR_006247240.1 lncRNA downstream 220061 21507244 ~ 21512483 (-) True LOC122324936
TU207946 lncRNA upstream 25872 21766949 ~ 21768597 (-) True G140859
TU207872 lncRNA upstream 29953 21771030 ~ 21774369 (-) True G140801
TU207986 lncRNA upstream 99438 21840515 ~ 21840765 (-) True G140882
TU207988 lncRNA upstream 100685 21841762 ~ 21842034 (-) True G140884
TU207989 lncRNA upstream 101049 21842126 ~ 21842345 (-) True G140885
XM_043219766.1 mRNA downstream 2316 21713484 ~ 21730228 (-) False LOC122324966
XM_043219765.1 mRNA downstream 2316 21713484 ~ 21730228 (-) True LOC122324966
XM_043219767.1 mRNA downstream 19482 21699406 ~ 21713062 (-) True wdr26b
XM_043219768.1 mRNA downstream 19889 21699406 ~ 21712655 (-) False wdr26b
XM_043220185.1 mRNA downstream 34850 21690418 ~ 21697694 (-) True fez2b
XM_043220461.1 mRNA upstream 9799 21750876 ~ 21755193 (-) True jdp2b
XM_043220462.1 mRNA upstream 9799 21750876 ~ 21755189 (-) False jdp2b
XM_043218899.1 mRNA upstream 19045 21760122 ~ 21763823 (-) True si:ch211-153j24.3
XM_043218898.1 mRNA upstream 19045 21760122 ~ 21763816 (-) False si:ch211-153j24.3
XM_043218879.1 mRNA upstream 38250 21779327 ~ 21787486 (-) False zc3h14
TU207887 other downstream 220191 21509629 ~ 21512353 (-) False LOC122324936
TU207613 other downstream 453803 21198710 ~ 21278741 (-) True G140616
TU207486 other downstream 756794 20973404 ~ 20975750 (-) False crnkl1
TU207179 other downstream 1669567 20061602 ~ 20062977 (-) True G140277
TU207100 other downstream 1674045 20057624 ~ 20058499 (-) False G140227
TU207987 other upstream 100036 21841113 ~ 21841468 (-) True G140883
TU207994 other upstream 104729 21845806 ~ 21846917 (-) False LOC122325102
TU208103 other upstream 371525 22112602 ~ 22113044 (-) True G140972
unassigned_transcript_2511 other upstream 373961 22115038 ~ 22115120 (-) True trnal-uaa_36
unassigned_transcript_2512 other upstream 374630 22115707 ~ 22115789 (-) True trnal-uaa_37

Expression Profile