RNA id: TU208017


Basic Information

Item Value
RNA id TU208017
length 1578
lncRNA type inter_gene
GC content 0.33
exon number 5
gene id LOC122325423
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21950746 ~ 21970149 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCATTTCCACTTACAGAGAAATTCCCATGTACCACCCATGAAGAATGATTGGTTCAGATCCTCTATAAATTACTAAGATGTCCAGGTGATCTTCGCACTGCGCAAAAGGACAATGGACAATAATACACATAATGTTGATTCATTAGCAACTATTTTCGAAAAAatggtgatgttttttttacgtGAAATAGTaagaatgattttaaattttattgtggAAAAATATCCTATTTCTGaaaattttattctttatgtaataatattatttgtattactattattactattattactattattttgtaGTATGGCTACATTtgataatagaaataatagacAAATACTACCAATTTGACAAAATACTTGATGATGAATTACgttaataattacttaaaaaaaaaaaaaaaaatcttaaacttttaaatgtacatttttctgttctgtttgttGTAACATCGGTAGGTATAAGGGGTGATGTCAGGTGCGCTGTCTTTCGATTGCCTTAGATTTTCAACAATAGACTGTTTCGTTTTATGCAAGTTGTGTGTACAAATTTTCCATTAAACAATATTGTATCTACacactgtatttaatttttccaacttaaatactataaaaaaaaatacattttaacaaaaacattaacaaaaacatttaacattttcctAAGGTGTTGCTTTATGACTATCAATTTAAAAAGAGCAATGTAAATgacaatttcaaaatattagcatatttccataaaaacatacaattattcactaaattaatttattaattagctATCTTTAAAGAGTTGTTATAGGAACACACAAGGAAAAACTATAGGAATAAACAAGCAGCCTAAAGTAAAAGGATCTAAACTCAGGAAGTGAAGACAGAAACGCTGGGGCAGAGAAACACTTCAAAATTAAAGTCCAAGGGCAGACGCCGAGCCCTCTTGACAGGTGAGAGCGGAGGGCTGGGAAGTCATCAGGGCCACCATGAGCAAGATTGAAAAATAATTAGGTTCTCATAAATATAAGAAGTTATTGTCCATTGTCCATTGTCAGGCAGTTGCCCAGAGAGAGATCTTGTTGTCCTGCCCACAACAAAAGCTGGTGTCATGCTGGTCTGGAGCAGATCATCATAATAGTGGTAGAAGAGCGATTCTGAAAGCTTAAGATTCGAAAACAACTCGAACTATCTCCAGACTGCACGCTTTGGGTGAAGTCTCAATCAGATCTCTCTTTGTCAAATCTTGTGCTGAGGTTCAGTGGAGCAATGCAAGTAAAATTGTTCATTGCAGCTGGCCTCTAAAGAGATGGTGTCTTGCCAAGCATAACTGACCACAAAAACCCCTGGTCATTAAGTTTGATTGCTCGGAAGCcccaaaaaaataattgcataatttgAAAAATAGCGCATCTTGAAAAACTCATTCTGTTTCTTGATGTTGTTATGACTTCTTGAcagtatgcatgtataaaaaagCTGAGCGACCTGTTTACTCATTGTTATATGGAATAAATGATGAACATGACAATGTGTTTGTGGACATTTTTTTGCTGCTGTCACTAAAAAGAGCTCAAACCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208021 lncRNA downstream 3215 21962196 ~ 21964129 (-) True LOC122325422
XR_006247296.1 lncRNA downstream 3638 21962197 ~ 21963706 (-) False LOC122325422
TU208020 lncRNA downstream 3645 21962196 ~ 21963699 (-) False LOC122325422
TU208005 lncRNA downstream 57985 21908991 ~ 21909359 (-) True G140901
TU207993 lncRNA downstream 121541 21845458 ~ 21845803 (-) False LOC122325102
TU208063 lncRNA upstream 69562 22039565 ~ 22041112 (-) True G140940
XR_006247257.1 lncRNA upstream 91569 22061572 ~ 22067308 (-) False LOC122325129
XR_006247256.1 lncRNA upstream 91569 22061572 ~ 22067308 (-) True LOC122325129
TU208092 lncRNA upstream 111521 22081524 ~ 22082617 (-) True G140964
TU208095 lncRNA upstream 127903 22097906 ~ 22098339 (-) True G140967
XM_043220548.1 mRNA downstream 30885 21935374 ~ 21936459 (-) True LOC122325511
XM_043220547.1 mRNA downstream 48540 21917818 ~ 21918804 (-) True taar11
XM_043220496.1 mRNA downstream 79821 21886498 ~ 21887523 (-) True LOC122325446
XM_043220499.1 mRNA downstream 82916 21883406 ~ 21884428 (-) True taar13a
XM_043220485.1 mRNA downstream 87165 21879154 ~ 21880179 (-) True LOC122325436
XM_043218684.1 mRNA upstream 31210 22001213 ~ 22006248 (-) True bmp2b
XM_043220027.1 mRNA upstream 83054 22053057 ~ 22058826 (-) True chgb
XM_043219962.1 mRNA upstream 122069 22092072 ~ 22097205 (-) True gzf1
XM_043219319.1 mRNA upstream 424832 22394835 ~ 22470270 (-) False atad2b
XM_043219318.1 mRNA upstream 424832 22394835 ~ 22470270 (-) True atad2b
TU207994 other downstream 120427 21845806 ~ 21846917 (-) False LOC122325102
TU207987 other downstream 125876 21841113 ~ 21841468 (-) True G140883
TU207950 other downstream 226340 21732546 ~ 21741004 (-) False batf
TU207887 other downstream 454991 21509629 ~ 21512353 (-) False LOC122324936
TU207613 other downstream 688603 21198710 ~ 21278741 (-) True G140616
TU208103 other upstream 142599 22112602 ~ 22113044 (-) True G140972
unassigned_transcript_2511 other upstream 145035 22115038 ~ 22115120 (-) True trnal-uaa_36
unassigned_transcript_2512 other upstream 145704 22115707 ~ 22115789 (-) True trnal-uaa_37
XR_006247154.1 other upstream 1419166 23389169 ~ 23401391 (-) False mcm9
XR_006247155.1 other upstream 1420462 23390465 ~ 23401391 (-) False mcm9

Expression Profile