RNA id: TU208235



Basic Information


Item Value
RNA id TU208235
length 408
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G141080
representative True

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 22539920 ~ 22540327 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AGATAAGGGGTTTATCAGCTAAAATGAGTCACGGTTGAGGAGGTGTGCGAGCGCTCCACTAATGGCCAGTATTGACAGCACTCATAATCCCCTCTGAAAGCCTTTCAAAGGCTTCATTCTAAGAACTCAGGGTTTCTTAAAGACTCCTAACCGTAAAACTCGGTTGGCTTAACGCATTTCACGTTTcacacttatatataatatatggcCGCAATTATTTGTCGCCGCttatatattttgtgcaatGGGATGCACAGTAAAATCACAATATGTTACTGATTCAGACAGATTTTTAGAGTGGCCTTAAAGACGAGGATTCAGGGAAGCGAGgatagaaaataagaaataattccAAAACTACAAGCGGTGACACTTTTGGACTCATCTGCCACCTTAAACAGATTTCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU208234 lncRNA downstream 6 22539593 ~ 22539914 (-) True G141079
TU208233 lncRNA downstream 353 22539367 ~ 22539567 (-) True G141078
TU208102 lncRNA downstream 427495 22112160 ~ 22112425 (-) True G140971
TU208101 lncRNA downstream 429051 22110663 ~ 22110869 (-) True G140970
TU208100 lncRNA downstream 433639 22105969 ~ 22106281 (-) True G140969
TU208237 lncRNA upstream 361 22540688 ~ 22541150 (-) True G141082
TU208238 lncRNA upstream 1136 22541463 ~ 22541694 (-) True G141083
TU208473 lncRNA upstream 120288 22660615 ~ 22662241 (-) True G141255
TU208522 lncRNA upstream 199314 22739641 ~ 22740927 (-) True G141283
TU208585 lncRNA upstream 290587 22830914 ~ 22831421 (-) True G141307
XM_043219741.1 mRNA downstream 34118 22498745 ~ 22505802 (-) False LOC122324950
XM_043219740.1 mRNA downstream 34118 22498745 ~ 22505802 (-) True LOC122324950
XM_043219319.1 mRNA downstream 69650 22394835 ~ 22470270 (-) False atad2b
XM_043219692.1 mRNA upstream 1450 22541777 ~ 22552274 (-) True opn8b
XM_043220550.1 mRNA upstream 17177 22557504 ~ 22567131 (-) True opn8a
XM_043219919.1 mRNA upstream 129715 22670042 ~ 22683646 (-) True clic5b
XM_043218592.1 mRNA upstream 229592 22769919 ~ 22776432 (-) True lin9
XM_043220475.1 mRNA upstream 236794 22777121 ~ 22791942 (-) True parp1
unassigned_transcript_2512 other downstream 424131 22115707 ~ 22115789 (-) True trnal-uaa_37
unassigned_transcript_2511 other downstream 424800 22115038 ~ 22115120 (-) True trnal-uaa_36
TU208103 other downstream 426876 22112602 ~ 22113044 (-) True G140972
TU207994 other downstream 693003 21845806 ~ 21846917 (-) False LOC122325102
TU207987 other downstream 698452 21841113 ~ 21841468 (-) True G140883
XR_006247154.1 other upstream 848842 23389169 ~ 23401391 (-) False mcm9
XR_006247155.1 other upstream 850138 23390465 ~ 23401391 (-) False mcm9
XR_006247156.1 other upstream 850140 23390467 ~ 23401391 (-) False mcm9
XR_006247216.1 other upstream 1251750 23792077 ~ 23823050 (-) False tbc1d32
TU208856 other upstream 1464360 24004687 ~ 24006665 (-) True G141502

Expression Profile