RNA id: XM_043219848.1


Basic Information

Item Value
RNA id XM_043219848.1
length 3119
RNA type mRNA
GC content 0.45
exon number 10
gene id matn3a
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 22744412 ~ 22754161 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGATGCTGTAGGAATCATACCGGTGTCAGGTTAGACCAGAGGAACGCACACAAATTTGAAGCGGACTTGAGAAGAACGAAGAAACAATGAAGTCCTTCATTGGGAGTTTGGTATATTGCCTCTCTCTTCTGCTGGTTGATCTCTGTGAGTCCTATGACTTTAACAATCCACCCCACATTTTAGCACAAAGTTATGCACAAAGACGAAATCACGCTCTTCCACATCGGACGCTGAACCCAGCAGTATACAGGAGTAAATACTGGTTAGATGGACCTGATCAACCTAACAAACAGAGGAGGAAGATTTTGCCCCGTCTTATCCCAGTAGCTTATCCAGGACCCACAGCTCCTTCTCAACCCAAAGTTCATGACTGGCTCAAAGACAAGCCAACCACAAAGgtgcaaaatacaaataacaacCACTCTCCAAATGAGGCGCACATGCAGCTGAGAGGTGAATGGGCACCGATAGTTTGCAAAAAAGTGATAGATCCAGAACAAAAAGTTGTGTTTACAGGAGAATCAGGGAAGCATACAGGCGTGTCAAAAGTGGACTCAAATCCACCAATTGTTGTTCCACAACCGCAGTATATAGATCCAGAAAGATCTGTTGATCTTACAGAGCAATCAACAAATAACCAGCCAACTGTTCCAACAGTTGCTCCTGAGACAGGGTTTTATAAATCAAAGCCATCAATGACCTTGGCAACCTCACAATCTTTGAATATCTCCCTGCCTCAAAAACCTCTGCCACAATCCTTGTCAACATTGGCTCAAGGACCAAATTCACAAAATTCATTACCCCAATCTATTACCACCACTACCATGACACCTGAGGCATATCCTCAAAGTACCTTCCCCGAATCCTTGCCAACATCCACCCTTACACCGGAGGTGTACTCCCAGAGCACTTTATCCCCACTCTTACCAAAGCTCACCTATTCAAGAGGGCCATATCCTCAAAAAATCCCACCCCAATCACCATTAGAGCCGTATGACCAAAGTGCCTACCCAGAATCCCAGCCGGCATCCACACTGATACCACTGACAAATCCTCAAAGCACTTCGCCTCAACTTGTACCAGTGTCCACTCATAGATTAAAGCCTCTTTCCCAAAAGATCTCATCCCAGTCCTTGTCAACATTCAGTTTGACACACGAGTCATATCTTCAGACCGCCCCACCACAGTTTCTACTAATGTCTACCGTGCCAAAAGAATCTTTACCAGAGGCATCAAACAGGATTATTACCCACGACAGGATAGCCATCACAGGGAGAACAGCAACAGATTCACAATGTAGGAGCCGCCCACTGGACCTGGTCTTCATCATTGACAGCTCACGTAGCGTGCGTCCAGGTGAGTTTGAGAAGGTCAAGATCTTCCTGGCTGACATGGTGGACACTCTTGACGTTGGCCCCGATGCCACACGTGTTGCAGTCGTGAACTATGCCAGCACAGTCAAAATTGAGTTCTTCCTGAAGAGCCATCTTACAAAGGACTCTATAAAACCAGCCATCAACCGAATCGAACCCCTCGCCGCGGGAACCATGACTGGTATGGCCATCAAAAAAGCCATGGATGAAGCCTTCACTGAAAAGTCAGGAGCACGGCCCAAATCGAAGAACATCTCAAAGGTTGCCATCATTGTCACTGATGGACGTCCTCAAGACCAAGTTGAGGAGGTGTCAGCTGCAGCGCGAGCTTCGGGAATTGAGATTTACGCAGTCGGAGTGGATAGGGCTGACAAGCAGTCGTTGAAGCTCATGGCCAGCAATCCACTTGAGGACCATGTGTTCTACGTGGAGACCTACGGTGTCATTGAGAAGCTCACCTCAAAGTTCCGGGAGACATTGTGTGGTATGGACGCCTGTGCAATGGGACATGACTGTGAGCACATATGTGTCAGCAGTGGCTCCTCCTTTTACTGCAAGTGCCGGAAGGGCTATATTTTGAACGAGGACCAGAAAACATGTTCCCTAAAACATATGGATGCGTGTGAAATAGGACACAGCTGTCAACACACTTGTGTGAGCACTGGAAACTCGTATCGCTGCAAATGCCGCTCAGGCTTTGTCTTGAACGACGACATGCGAACATGCTCCATTAAAGGCGCTGGCGCTTACGGACATGGTGACAGTGTCCACAAGGGTGAccgaaacaaaaagaaagatggCAACCGAAATGGTGACGGTAGCGCTAGTGTGGATTCCTGTGCTTTGGGCCATGACTGCCAACACGCATGCATCTCCAGCGGTTCCTCCTATTATTGCTCGTGTCCTTCTGGCTTTGTCTTGATGCAGGACAAGAAATCATGTTTCAAAGCCAGTGACGCAGATGGAGATGGTAGTGCCAGTCTGGACTACTGTGCGCTGGGTCATGAATGCGAACACATTTGTGTCAACGATGATGCTTCCTATCACTGTGAGTGCCGCCGGGGTTTTGTGTTGCAAGAAGACAAGAAAGCATGTTCCAAAAAACAGGTGAAAGTGGAGATCGTTCAGGACCCGTGCATGTGTGAAGCCAGACTGGCTTTCCAGAGGCAGACACAAACCTCCCTACAGGACCTCAACTCCAAACTTGCTGCTGTCACAAGAAAGGTTGAGCAAATGGAAAACATGCTGGGACGCATGTAACGGAGCGGTTCTTGTGATTACTGGAGTGGATATGACAAGAAGGGCTCCTTTTTCATCAATAAAGCTTCATCACGGGCCACAATGATCACAAGAACGGCTTTGAAATTGTATCACAGCGGCTGATGTTCAGATGAAGTATAAAAGAATATTAACTATAGTCAAGtagtaattaatattaataagagaTTAAATTATGCATGAAATGCTGGAATGTACGtataatgatgtttttttgctCCCCAGAAATGgtcaaaaaaaatatcttaaatagactatattaaaacatgtattGTAACCAAAGACCGTtatcaaatgtgtattttaattgcttgtgttcaTGTCAAAGAAAGAATGttcttatttttactgtttaatctTATGTAGACTCTCATGTATACggttaaagttaaataaagacGATGTAGTCTACAGTATTTATAACCAAGCagtaatatttgctttattaaaacttGTAACACCTTTAA

Function

GO: NA

KEGG:

id description
K19467 MATN; matrilin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208246 lncRNA upstream 186910 22557229 ~ 22557502 (+) True G141091
TU208239 lncRNA upstream 201880 22542136 ~ 22542532 (+) True G141084
TU208236 lncRNA upstream 203085 22541118 ~ 22541327 (+) True G141081
TU208104 lncRNA upstream 629545 22114395 ~ 22114867 (+) False LOC122324401
TU208057 lncRNA upstream 631207 22112974 ~ 22113205 (+) False LOC122324401
TU208271 lncRNA downstream 104828 22858989 ~ 22860327 (+) False si:ch211-203k16.3
TU208287 lncRNA downstream 166532 22920693 ~ 22923128 (+) True G141121
TU208355 lncRNA downstream 312426 23066587 ~ 23073665 (+) True G141168
XR_006247220.1 lncRNA downstream 440460 23194621 ~ 23206082 (+) False LOC122324747
XR_006247221.1 lncRNA downstream 440460 23194621 ~ 23206082 (+) False LOC122324747
XM_043219846.1 mRNA upstream 135 22739633 ~ 22744277 (+) True laptm4a
XM_043218981.1 mRNA upstream 6285 22689228 ~ 22738127 (+) False mark3b
XM_043220502.1 mRNA downstream 1831 22755992 ~ 22757979 (+) True ttc32
XM_043220501.1 mRNA downstream 4198 22758359 ~ 22763879 (+) True zpax1
XM_043218594.1 mRNA downstream 13674 22767835 ~ 22769876 (+) True mixl1
XM_043218593.1 mRNA downstream 13676 22767837 ~ 22769874 (+) False mixl1
XM_043220476.1 mRNA downstream 33304 22787465 ~ 22789136 (+) True LOC122325427
TU208163 other upstream 226737 22506767 ~ 22517675 (+) False fkbp1b
XR_006247241.1 other upstream 267638 22471786 ~ 22476774 (+) False ubxn2a
TU207855 other upstream 899711 21844146 ~ 21844701 (+) True G140785
XR_006247231.1 other upstream 1545793 21168775 ~ 21198619 (+) False ipo13b
XR_006247313.1 other upstream 1604614 21139684 ~ 21139798 (+) True LOC122325571
unassigned_transcript_2513 other downstream 346045 23100206 ~ 23100288 (+) True trnal-cag_35
TU208810 other downstream 1318710 24072871 ~ 24074423 (+) False G141475
TU208811 other downstream 1318710 24072871 ~ 24074423 (+) False G141475
TU208812 other downstream 1318710 24072871 ~ 24074423 (+) True G141475
TU208889 other downstream 1686082 24440243 ~ 24493381 (+) True G141524

Expression Profile