RNA id: XM_043219253.1


Basic Information

Item Value
RNA id XM_043219253.1
length 2788
RNA type mRNA
GC content 0.46
exon number 8
gene id si:ch211-203k16.3
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 22842805 ~ 22860327 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCAGATCCAAGCAGCGGCTGTCTACATGCGGACTGTGAAAACACAAGACTGCTGCAGCCAAAAGCCAGGAAGGACAGAGCATCTGAAAACAAGAAAGACCAGATCAGTTCCTCCATCCCTCAGGAATCCAATTACAGAGGATTACAAGGATAAGATGCCCGCAGTATCAGCCGTCCCGCGACACATAAGGtgtagaaagagagagcgaggaTGGCAGGACGCGTCTGCGTTTCCCCAGAAGACGGCTGAAACAGAAACAGAGTCAGTGACTCTGACACCTAGACCTGTTCCTGTGTGACGAGTTCTCCTCAAGACTGGAGGTCAGAGAGCTCGTACCCTGGCCGTCTCCCCCAGGGTCGATCCGATGGAGGGCAGGCCTCTCTCGCCCCTCTTGCTGGCCGTACTGTTTCTGGCGACAGGCGCGAGCGATGAAGAGCACTCCCTGCACACGCATCAGGTCAGCACGGCTCAGTGCGGAGAATACAGCAATCAGGTCCTGGAGGACGGCATGTGTCGACTCATGGCCACTCTGCCCCAGCTGGACGAGCAGCGCTGCCCGGACATGTTCCGCTGTACGGATGAGGTGTCGTACTGGCTTCACGAGAACGAGGAACGCAAACAGCAGATTCTGGCCCTGCGGGAGACGGTGTCTGAGCTTCAGGAGGAGCTTCGCAACCACCGCCATCGAGTCAAAGTCTTAGAACTACAGAGCGAAGAGAAGAACCGCAACAATTCATCTATTGAGCAGCGCTTGCACGAGCTGGAGGATCATTACGCCGAGGCCACGACCTTGCTGCACATCCAGGGCTCGCTGATCTACGATCTCCAGGCCCAGATTCAGAACCTCTCCCTGCTCGTGGAAAAAGTCAGACGCAACCCGGGCTGCATGATCAACATAGTCCGCACCAGCCCGATGCTCAGCGCTCAGGAAGCCCTGCATCCCGAGGTGCAGCATGTCAGGAACTGCCCCATCGACTGTGCCTCCATCTACTATAATGGCGTGCGTCGCTCTGGGATCTACACTGTAGTGCCCTCACTAGGGGCCATGCCCGTGGAAGTTTACTGCGATATGGACACAGAAGGTGGCGGCTGGACCGTGATCCAGCGTAGACAAGACGGCTCTGTGAACTTTGACCGCAGCTGGAAGGAGTATAAAGAAGGGTTTGGAGACCTGCACACCGAATACTGGCTGGGCAATGAACACATCCATGACCTGAGCAGTCAGGGAGACTACATGCTCCGTATCGACCTGGAGGACTGGAGCGGGAAACACAAACACGCCGTCTATCAGAGTTTCAGTGTGGAGGACGAGAACACTCAGTACCGCCTGCATGTGTCGGGCTTCAGCGGGACGGTGGAGGACTCCTTCAGCTGGTATCACGACAAGCAGAGCTTCAGCACGCCTGACACGGGCAACATCTGCGCCGAGATCTCCCACGCCGGCTGGTGGTACAACCAGTGCTTCTACGCAAACCTCAACGGCATCTACTACAAGGGTGGCCGGTACTCGCCGAAGGGGAAGAACCCTCTAGGTCCGGATGGTATCGTGTGGTACACCTGGAAAGATTCGGATTATTATTCTCTGAGGAAGGTCAGCATGATGATCCGACCCAGGACCTTCAGACAGCATCTGTCACCCTGAATACTtcaatcagccaatcacagttcTCAGAGCCACAGCGATGCGAGACGCATGGATTCGTCCAGGCTGAAAATCTGTGCATGGTTTTCAAGAAAGCTgtgtaagcatttttttttaggtttgtacCAAAGACTAGTGGAGGACTGCTTCTGAGACCCGAGAAATAATCCTCGAAAGTCAGCGTTTGCCATTCAGTGTGTTACTTGCCTATATTTTCTATACCCGTGgttttaagatttaaatattttgttgacttattttataaatgtgtattacAAGTATATGTAGTTTGTGTAGCATGCGATGGACCAAAGAcccttttgattttattaaaccCTAAATAGCAACAAATgatatattattgcatttaatcaaatgtaCAGTAACATTCAAAATCTGGGGCGGGAAAAGGTTTTGAAAGAAGACTAAGGCagcatttaattcataaaaaataaaatattgtgaaatattattacaaattataatttttttaaagtttaaaatttattcctgtgatgcaatgGCAAATTTTCAGCACATAATCcatctgaaattattattatatgctgattttatgcgcaagaaacatttcttacaactatcaggttttttttttaaaagcactacTGACCCCCAAATTTTCAACGCtactataattttttaaatagaaatttgtaaatctaaaaatatttctttgcaATGTtgcataattatgtaaaaactcaaaacttttaaagagagagaaaagacttGAGTTGAgtgatttttcaggttttatttcCACGGAGGTTAAATAAGTGGTTAACAAATATAAAAGGGTAGTATTTGGGGTAAAAAGTCCCTAAATAAAGGGCCTGtgagctcacaaaaaaaaaaaaaaagccaaaaaccaAAGCCAAAAACACTGTAGCACGataaaaatcagttttcatTTGTGAAAAATGCCTGTGATAATATTGTATGTTCGTTATGTACAGTACTGTACcgaaagaataaaatatatagtttatcaAATGCCAAAAACGAGTGAAATAAACAGGAAACGATACAAAACTTGTTGAACTGATTACTTTATGTACTTATTGCTTTACCTGCAAATGATTTCTGTTCtattatgaaatgaataaaccacaaaaacaacaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208266 lncRNA upstream 97019 22745420 ~ 22745786 (+) False matn3a
TU208246 lncRNA upstream 285303 22557229 ~ 22557502 (+) True G141091
TU208239 lncRNA upstream 300273 22542136 ~ 22542532 (+) True G141084
TU208236 lncRNA upstream 301478 22541118 ~ 22541327 (+) True G141081
TU208104 lncRNA upstream 727938 22114395 ~ 22114867 (+) False LOC122324401
TU208287 lncRNA downstream 61484 22920693 ~ 22923128 (+) True G141121
TU208355 lncRNA downstream 207378 23066587 ~ 23073665 (+) True G141168
XR_006247220.1 lncRNA downstream 335412 23194621 ~ 23206082 (+) False LOC122324747
XR_006247221.1 lncRNA downstream 335412 23194621 ~ 23206082 (+) False LOC122324747
TU208384 lncRNA downstream 335782 23194991 ~ 23196194 (+) False LOC122324747
XM_043219708.1 mRNA upstream 3359 22807159 ~ 22839446 (+) True efr3bb
XM_043219711.1 mRNA upstream 3359 22807159 ~ 22839446 (+) False efr3bb
XM_043219709.1 mRNA upstream 3359 22809195 ~ 22839446 (+) False efr3bb
XM_043219712.1 mRNA upstream 3359 22812274 ~ 22839446 (+) False efr3bb
XM_043219710.1 mRNA upstream 3359 22812702 ~ 22839446 (+) False efr3bb
XM_043220169.1 mRNA downstream 19541 22878750 ~ 22882976 (+) True LOC122325208
XM_043220168.1 mRNA downstream 24898 22884107 ~ 22888671 (+) False LOC122325206
XM_043220167.1 mRNA downstream 24899 22884108 ~ 22888671 (+) True LOC122325206
XM_043220166.1 mRNA downstream 30595 22889804 ~ 22893878 (+) True LOC122325205
XM_043219822.1 mRNA downstream 35798 22895007 ~ 22899921 (+) True LOC122325007
TU208163 other upstream 325130 22506767 ~ 22517675 (+) False fkbp1b
XR_006247241.1 other upstream 366031 22471786 ~ 22476774 (+) False ubxn2a
TU207855 other upstream 998104 21844146 ~ 21844701 (+) True G140785
XR_006247231.1 other upstream 1644186 21168775 ~ 21198619 (+) False ipo13b
XR_006247313.1 other upstream 1703007 21139684 ~ 21139798 (+) True LOC122325571
unassigned_transcript_2513 other downstream 240997 23100206 ~ 23100288 (+) True trnal-cag_35
TU208810 other downstream 1213662 24072871 ~ 24074423 (+) False G141475
TU208811 other downstream 1213662 24072871 ~ 24074423 (+) False G141475
TU208812 other downstream 1213662 24072871 ~ 24074423 (+) True G141475
TU208889 other downstream 1581034 24440243 ~ 24493381 (+) True G141524

Expression Profile