RNA id: XR_006247220.1


Basic Information

Item Value
RNA id XR_006247220.1
length 1200
lncRNA type inter_gene
GC content 0.51
exon number 9
gene id LOC122324747
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 23194621 ~ 23206082 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTTCTGCCGCGCGCGTTgctttttggtatttttaaaggtttatattCTCAATTTAGCGTGTAAGTAACTGagttttaaactacattttttgtaGTATCACCATCCAGACCTTCACTGAAGCCAACGAAGAACTGCAGCGTTAACGATTTTGAGGCACTACAGCCGACTCTACGGAGACTGAATAGGGATCCTTCTAGTAGTCTGGAGATCTAGGAGGAGCTCTCTGCAGACTCTGCCGTCTTGGAGGTCTTGTCGTCTGAAGGACTTTCACTGGACAAAGCAGCGTCTCCGTTCTCTGTTCTGTTGTTCACTAAATGCTTCCCTACAGCTTtaaggagaaagagaaaaGGAAGCAGGGTCAGCAGTGCCATTATTGTGAGCGGCTCCTGACCCCTCCTCCAGCTCGTCCAGGTACAGACGGTAGCGGTGTCCGCTGTCATCTTCATACTCCACGTTCTCATCGTCAGAGTCCACCTCTGGAGCCACGTAAACCACCTCGAACTCAATTTCCCCCCGCTGCAgaacgaggaaaaaaaaaaatgaacatctgGAAGTGTGGGTGTATGAGTAAATGTCAGagCCTGACAGACCAAGTCCTCGTTTGCTTTTACTAAACAGAAAACAGCGCCCACTTTGTGCGTTCGACAGAAAAGAAGTCAGATGGGTCTGGAGCAACACGAGGGTTGATGTTGTTGACGGCTAAGATGGCATCTCCCACATGCAGTCCTCCGCAGCGCTCTGCGGGCTGGGTTGGGTGGATTTCGGAGATGAGGATGGGAACGCCGTGCTCTTTCCCGCCCTCTCCTTGTCCAGATACTTGGCTGCCAGTCTGGCGCCGTACACCTCGGCCTGTAGTACCGCAATGTGCCTGCGGAGGGCCTCGTTCTCTTTCTTCAACATCTTCACCTCTGCCTCCAACTTGGCCTCcttcactttttctttcttgctgGCCTCCAGCTCCTTCTCCTGAGACACGCGGTCAAACAAAGTCAAGAGGACAAGAAACAGAAGACCTACGTCACCACAAAAACTACAAACTCACAACAGTGCATATGACAAGCGAGGAAGCTGTTGCTGTGCTCACCATCCTGTCCTTGATAGAGTCAGAGTCGACCGCCTGTCCACCTTTGGCTTGGAGTTTGAGCTGCATGGCGTGAAGTTGAAGAAGTTGTTCGTGGACCTCCTTCTCCACCACAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208355 lncRNA upstream 120956 23066587 ~ 23073665 (+) True G141168
TU208287 lncRNA upstream 271493 22920693 ~ 22923128 (+) True G141121
TU208271 lncRNA upstream 334294 22858989 ~ 22860327 (+) False si:ch211-203k16.3
TU208266 lncRNA upstream 448835 22745420 ~ 22745786 (+) False matn3a
TU208246 lncRNA upstream 637119 22557229 ~ 22557502 (+) True G141091
TU208404 lncRNA downstream 124109 23330191 ~ 23332366 (+) True G141207
TU208414 lncRNA downstream 137657 23343739 ~ 23351630 (+) False pln
TU208419 lncRNA downstream 137657 23343739 ~ 23351630 (+) False pln
TU208415 lncRNA downstream 137694 23343776 ~ 23351630 (+) True pln
TU208417 lncRNA downstream 137694 23343776 ~ 23350419 (+) False pln
XM_043220324.1 mRNA upstream 2236 23164445 ~ 23192385 (+) True dcbld1
XM_043218701.1 mRNA upstream 47645 23142907 ~ 23146976 (+) True vgll2a
XM_043218702.1 mRNA upstream 47645 23142907 ~ 23146976 (+) False vgll2a
XM_043218620.1 mRNA upstream 75485 23109345 ~ 23119136 (+) False rfx6
XM_043218619.1 mRNA upstream 75485 23109966 ~ 23119136 (+) True rfx6
XM_043219390.1 mRNA downstream 4708 23210790 ~ 23214047 (+) True LOC122324745
XM_043220397.1 mRNA downstream 8994 23215076 ~ 23222915 (+) False nus1
XM_043220396.1 mRNA downstream 8996 23215078 ~ 23222915 (+) True nus1
XM_043220395.1 mRNA downstream 26302 23232384 ~ 23311466 (+) True slc35f1
XM_043220394.1 mRNA downstream 106117 23312199 ~ 23320816 (+) True si:dkeyp-114g9.1
unassigned_transcript_2513 other upstream 94333 23100206 ~ 23100288 (+) True trnal-cag_35
TU208163 other upstream 676946 22506767 ~ 22517675 (+) False fkbp1b
XR_006247241.1 other upstream 717847 22471786 ~ 22476774 (+) False ubxn2a
TU207855 other upstream 1349920 21844146 ~ 21844701 (+) True G140785
XR_006247231.1 other upstream 1996002 21168775 ~ 21198619 (+) False ipo13b
TU208810 other downstream 866789 24072871 ~ 24074423 (+) False G141475
TU208811 other downstream 866789 24072871 ~ 24074423 (+) False G141475
TU208812 other downstream 866789 24072871 ~ 24074423 (+) True G141475
TU208889 other downstream 1234161 24440243 ~ 24493381 (+) True G141524
XR_006247270.1 other downstream 1762798 24968880 ~ 24992667 (+) False LOC122325234

Expression Profile