RNA id: TU208426


Basic Information

Item Value
RNA id TU208426
length 5783
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G141216
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 23388492 ~ 23408824 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGATTTGTCATTATTAGGTTTATTGTTCCTATATaaagaaaaagtcaaatgacaataaaagtgtttatttttcttcttgtttcagAGCAATACGTGTCGATGTTTATGAAAATAcaagcattttaaatcaaacgTCCTTTGCTTTTGGTCCCCCGAACGGGCGAAGGTCGACTCACATAACAGACACACTTCATTAAATGtcacaataattatttattcttacGCATACAccagtaatataaatataaaatatgcatttattttaaaattagtgaGACATCATTATATCTGTGTTGAGACATCCATACAAACAGTTTAATCCTACCAAAATTGATAATGCAGCTGTAACAAAGTCATTACGGTGGCATTCTAAAATTAGATACAGAGGAGACAATACTGTTGTTATTTCTCTTTTAACAAATAGTAATTAGCAGCGTATGCACCACTCTATAGAAACtgcagtaaattaaaatgtcaaacataCCTATCatcactttaaaaacaacaaacccATTCACGgtggggaggaaaaaaaataaataaattgaacaaaTGAAAGGATGTGCCGTTAAATAATGTAtcacttttttgtctttttttggtcGACATGCTCTTTAATTGCAAAAGTCAGAAGGAGAAGTACTGAGCAAACCACTCTTGTCTCTGGGGGTCTGGAGAGGTGACGGGTGATTCTTCTCCTTCAGGAGggctgtggagaaaaaaaacgaacagaGGGAGACAGGGATAgaaggagaaaaacaaacaaagaaatacaGTCAGAGACATGGAGAGCATTACAAACCCACTAAACCACAGCTTCTCGCTGCACTGAAAACGCCGAAGCGTAGCAAACGGTTGATTGTCCCGTCCGCGCGCTGtcctttagtttttattttgttttgcgcGCGTTTTCCAGGAACAGGCTGATATGAAAGCTTCATTGAACTTGCAAAAAGGCCTGGTGAGCGCCGTGTGTCAGAAATGTCATGAATGCAAATTGCCGTAATATTaacgttaaaaataaaaaggtttctttCCTCAGaccgttcaaaggtttgggtcGGTaggatttctttcttttgtttcgtTCAGCGTGAAGGGGTTTCTATTTTGAATATCTACTGCCCTTACCGTTAATTacgttaatatatatattacatagaaaactgttatattgtaaaaaaaaaaaatgggaattTAACTTGAATGCAATTTCACAAAAttgaagtttttaattttaaaaaagtaatatattttattttgattaatctaCAACTAGCTAGCAATtgacagaaagatagatagatagatggatagatagatagatagaatgacagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagagcctgagacagatagatagatagatagatagatagatagatagatagatagatagatagagcagatggatggatagatggatggatagatggatagatagatagatagatagatagatagatagatagagcctgagatagatagatagatagatagatagatagatggatggatagatggatggatagatagatagatagatagatagatagatagatagatagatagacagatggatggatagatggatggatagatggatagatagatagatagataaatagatagaatgacagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatggatggatagatggatagatagatagaatgacagatagatacatGATAgaatgagatagatagatacatgatagatagatagatagatagatagatagatagatagatagaatgacagatagatagaatgacagatagatagatagatagatacatgatagaatgagatagatagatacacgatagatcgatagatagaatgacagatagatagaatgacagatagatagaatgacagatagatagatagatacatgatagaatgagatagatagatagatagatagatagatagatagatagatagatggatagatagatagatagatggatagatagatagatagatggatggatagatggatggatagatagatggatagatagatagatagatagatagatagatagatgacaaaTGGATATATATGActgatattttatgtaaatgataGACAGAAAGGGAagatagatatttttttcttttttgttctttcatatAATCTTTCCAGGAAGCTCATAAACTAGAGTTTCTCTCAAGGTGCAGCGTCTGTGATGTAGTCAACCTCCAGCTCCTTTCAAGGTCTTCCGGAGCTTTCAGTCCTGATTAATTTAGCCCCCAGCTCAACATTTATAGAAACACTTTTTATTCGTCCCTCATAACTCCTCAAAACACTAAGCGCGAGCGCGCCTCTACGCTGCTGCGGaacattttcctgtttattcCGAGGAAGGAGCATCTCTAAGCTACAAGTCGTCGTTTTTTTCCCGCCTCAGGTAGTTTAGCATTAAACGAGTACGACGACTCGCATCTGGGCTTTTACCACCGACCACAGGCAGTCAATGAGGATGTTACCCTTTCGTAGTTTCATAATATCCACTAAGTGCTAATTTGCTTAAACTGCTAATAGGTACATTTCAGGTATACGCTCCCTTTaggtaaataaggtacaaaggCTTCCCTTTCGAAAGGATGCTTCTCTACCGTCacgttttgtaccttttttttttttactgagaatGCATGCATCTGATGCTACGTCACTGTGCCATCAAATGCGGAGGCCGATAAATATCTCACGTATTACACTAATGTAAAAGTAGTTTGAAAAGTTGAGCCAGCCAGCAGACCGGTATCTTCTGAATCCTGGTATTCCTGGTTGGCAATCTCATCTCTATTCTCTTATATCTCCAATGAAATCAATGCGCTTTGGTCTCAGACGCCTGAGCCGCGGCAACTCAATTTAACGCTCAATCGAGCATTTACATCAGCACTAACGCAACGTCTACCCGCACCGAGACGCGGGATGATGGAAGTCAAACACCTTCAAAGCAGCACACCTGAAACAGAGCTCTTTgacttatttaaagcaaattaGCATGCTATGGGGAGCGCTAACATTTTTGAATGTATTCCGATGGATTTTTTCAATCGTTGGGTTTATTTAAAAGTGCTAGACAGatgcgtttttttattttttagcactCCTTGAGcatcacatttttaaagaccCAATTGAAATCACttattaaaataggaaatgtGTGCATATGAGCATATGACCAAACAATATTGtgtaaaaatctatatatttttctgtttctgtataTAAATGGCATACCGTGTTAACAATGAATGTGTATGTGAGCAAGTCTTagctttttagatttttttaatgtaaactatAAATATCATAATCTTAATTGCGTCTTGACAGATAGTTAGAAACTACTAGTtatagcacaaaaaaacatcaagtgGTATGGAAAATTTTTCATATCCACCGACGTTAATCTACTCGCCTGTCGGACAAAATGACAGATTCTGCAATACGATTGGCCAGATCACCCGTCAATCAAAACTCCCAACGAAAGCTCGATTTTGGAAGCACTTAGGATTGCGTTAGCATTTAAATGGCCGGAAAGCGAGCGCATAAACTAAATGCCACAAAACTCCGGTGTCAAATAcaaataccatttttaaaaatcgttGGTTTACGTAAACATATGCTAGATGGATGCCTTCGcccatttttaatgtgcatttctgTCAACTTTTAGGATTACATTAGCATATAAACAACCTGAAAGCAAACGCATATTTAACTTGAGCggcaaattacatatttaaacaaaaaaacaaaacatttatttaaatgcgcTCGATGAATGTCTTTGACTCTTGTGATGCAtgtagcaatttaaaaaaaacacaaatcgaATTGAAACTGGCCTTGACATTCctataaaaaaagacttttggTCGAACTTTtcattgaatattttaaataataatctaataataatccTTCGACAGAGAATTAGACTGGATATGAATGCATAAAACcttttctcctcttctttttccagactttaaattttaaacgtGCATATCTAAGTCAATTCCGTCAGCTTTAACGATCGCATTAGCATATAAATGGCCCGAAAGCAAacgcatatttaataaaagccacaaaactcAAGTGTCAAATTACACTTCTGAAAAATCTTTCGTTTATGTAAATGTGCTCGATGAATGTCAATATACATCTagccgtttaaaaaaaaaagaatcaaactgaaacagCCGTTGACATATTTCCTATCAAAACAGgatcaaaaagtcattttttcataaaatatttgaaacaacAACCCGATTTTCACGCCAGAGAGCATCCGACTGgacataaatgtgcaaaaatcaATATTTCTCTCCGTTTTTTCCCCACACGGTACGTTTTAAATGTGCGTATCTCTGTAAAAGTGAATTCTGTCAACTTTTTAGGAGCGCATTAGCATATAAATGGCCTCGCGGCAAACACGTATTgactaaaagccacaaaactcGAGTGTCGAATTACAAAGagcacttttaaatgtattttgagacCCCAAAGCTCAAGTGCAAAAGTACAGTGTGAAATCctaattcttttaaaatgtcaacagaGGGGCCCGCTCGAATATTAAAGAGCGACTCTAGTTCGGTTGCTAAGCGGACCAGGTTCGTGGACTGTGTGTGAGCGTCTCGTGACGAAAGAGTACAACTCCACCTCACTCGTTTGCATTCAAACCGGCATGCAGGGAAACACGCGTAACGGTGCTTCGGACGACACGATACTTCCTGAGTCGAGAGCAAAAACATGCATGACACAGCAACCGCTCGAAACATGCCCACTGCCAAAGCAGAGCCATAGGCAAAGGTTTATTGTTGGAAAAGAGTGAGGATAGTGTATTTAGGGAGCATATAAAACCCAAAAGAGTGTAATCTGCATGGTCACACAGATGCAAGACAGTACATTGcggaaaatgaatattttttgtttatttttgtcatttaaaatattcattctcTCCGATGCTGTGTGGTGCTCAAGAACGATAAAAGACATCACGTGACAGATGAGTCGTATAACTTCCATCACGAACAGAAAACACGACACGGAGACAGACACCgactcccagcatgcactgcaacGGTGGGGACACATGCTCCCATTTGCATTCCAATGCCATTTCCAAAGCTCATGTATGGGACTTTAGAAAGTAACATTAAGCATACATGTACATCAGTGTTAGGAAAGAGCTCGAGTATCCCTTTTATTTGCCTGACGTGGATGCGCTGGCTGCGTTCGGAATGGAATACTAGCTTCTTGCATACAGTGTGAAACAGTGAAAGTGTCTCAGAAAGTAGTATGCTGCATTGTTAGCAAATAAAACGAGAAGTATGcactaaacatctaaaaaaaaaaaaccatcaaaACCTTTTTGATATAACTGTGTAATTTGATACAGCGTTGTTcttgactaaaactaaatagaaCTAAAACTAATAGAAAAAGTTTGtcaattaaaataagaataaattaaattattagaaatgaTTAGAAATTAGTGATTAGAAATTGataattagaatattagaaACGCTACCTTTGCAACGAACTAATAAGTTAAAGTTCAATAAATGGAAATATGTATAAGCGTAGAAATTTTTGTTTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208414 lncRNA upstream 51391 23343739 ~ 23351630 (+) False pln
TU208716 lncRNA downstream 162271 23571095 ~ 23571454 (+) True G141403
TU208755 lncRNA downstream 362271 23771095 ~ 23771426 (+) True G141436
TU208758 lncRNA downstream 373684 23782508 ~ 23782720 (+) True G141439
TU208797 lncRNA downstream 538792 23947616 ~ 23948827 (+) True G141464
TU208798 lncRNA downstream 540437 23949261 ~ 24007460 (+) True G141465
XM_043220398.1 mRNA upstream 51366 23343715 ~ 23351655 (+) False pln
XM_043220399.1 mRNA upstream 51366 23343715 ~ 23351655 (+) False pln
XM_043220394.1 mRNA upstream 82205 23312199 ~ 23320816 (+) True si:dkeyp-114g9.1
XM_043220395.1 mRNA upstream 91555 23232384 ~ 23311466 (+) True slc35f1
XM_043220396.1 mRNA upstream 180106 23215078 ~ 23222915 (+) True nus1
XM_043219346.1 mRNA downstream 414276 23823100 ~ 23824879 (+) True hsdl1
XM_043219347.1 mRNA downstream 416107 23824931 ~ 23829080 (+) True gja11
XM_043219348.1 mRNA downstream 420408 23829232 ~ 23831383 (+) True gja13.2
XM_043219350.1 mRNA downstream 423494 23832318 ~ 23835853 (+) True gja12.1
XM_043219349.1 mRNA downstream 431948 23840772 ~ 23843490 (+) True gja13.1
unassigned_transcript_2513 other upstream 302733 23100206 ~ 23100288 (+) True trnal-cag_35
TU208163 other upstream 885346 22506767 ~ 22517675 (+) False fkbp1b
XR_006247241.1 other upstream 926247 22471786 ~ 22476774 (+) False ubxn2a
TU207855 other upstream 1558320 21844146 ~ 21844701 (+) True G140785
XR_006247231.1 other upstream 2204402 21168775 ~ 21198619 (+) False ipo13b
TU208810 other downstream 664047 24072871 ~ 24074423 (+) False G141475
TU208811 other downstream 664047 24072871 ~ 24074423 (+) False G141475
TU208812 other downstream 664047 24072871 ~ 24074423 (+) True G141475
TU208889 other downstream 1031419 24440243 ~ 24493381 (+) True G141524
XR_006247270.1 other downstream 1560056 24968880 ~ 24992667 (+) False LOC122325234

Expression Profile