RNA id: TU208473


Basic Information

Item Value
RNA id TU208473
length 1627
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G141255
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 22660615 ~ 22662241 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCATGATAATTTCCCTTAAACCCTTTTTCTATCCTTGGATAAAAGAGAACAGGCTTCACAGGGAAGAAAAGCGAGATAATTTAAACACAGATGTGCAAAGGAAACAAAGCATGCAAGAACCAGAGACAAATTTGCTACAAATTGCCCTCAGTTAACCTGTCAGATAAATACTAATTTACAAAAGAAGAAACGAGATAATAATTCAACAAAACTAGGGTGGTGTATTTACCTCCTGTAATATACGACATGGTCTCTGAACGATGTAAACATTTCGTACACACTCACAGCTATTTCAATTTATAGGTAGACGCCCCTGATTTGAAGCCGTTTTTGCCGTCAGGATGGGATAACCGGGAACGCCGACCTGGATCCTGGGATGAATTCAAGCAACGGCCCTGGTTTGAAGCAGCCAAAAGGAACCTAGTTCTGCCAGAAATGCAATACTGGACCAATGTTAAGGTAAAGAAGGTCAGAAACACATCCAACTCAAGCTAAGAgctttggtttattttaatttaattgcttaaATATGGGCTTTATAAGCCGTATAAAAAGCACTGCTTCATAGAAAGCTTTCAGTTGTTTGGGGAGGTCTGTATAGTTCCAACCGTAAGGCACTCGATAAATATAACTCCGTTAGACGATTGCAGTTGGGCAAGTCAGTCTTTTCTCGACTGGCATTCTGAAATCATGAAGCTAATTTGCACATTACTGAGCTGATAATTAAGGTTTCATAACCGACAATGtcgataaaataaaataaaataaaataatcaataaaataaaatatagctaCACAactggtcaaaagtttgggctcagtaagatttgtttaatgtttttgaaaaatagagtttttttaatgctgcattcatttgatcactTTAGCATAAAAGCTGCAACGCTGTGAAAACATCActgcaatttttcttttatttattttaaaatgttctttcatttctgtgacgcgaagctgaattttcagcatcattaccatAGTCTATAGCGCCTTTAGAAATCGAtctaatatgtattattattaaaattcacGTTGAAATATATTtcgtatttttgtggaaactgatgcATTTCTCTTTATctgaaatataattgttttctcATCCATGTcgatttttgatcaatttaatgcgcATTTGCAAAATActaatttcctaaaaaaaattactgagcCCCAAACTTCGAATgtttaaatactataaatacaacacaaataaaaaaaaaggaatttactCCAGCTGCATTGTTGCAATGGGTAATATAGTGCCTTAACTGAGTGTATTACCCTCTTTTTTGAGGATATGAATTGCTCCAGTTATCAGGAAAAGAGTATCCTTGTACCATCCAGAACCTTCAATATTCCCCCACTGGAAACCTTTCCCAGCCGCGTTTAGTTAAGCAACATATAAGCTAAATAAATTATCCCAGCACATGCATGCTACTCAAAGAAAGCTTGGTCTAGCACATTGGCAAACACTTTTGAGCATCCGTGGCTGTTTCTTTGGTTTAAAGCTTTATAACAGTGAAAAAGCACTTAGCATCATTAAGCAATATTAACTGCTTACAAATGTATTGTACTTAGACACAGAGACCCTACATACAACTCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208238 lncRNA downstream 118921 22541463 ~ 22541694 (-) True G141083
TU208237 lncRNA downstream 119465 22540688 ~ 22541150 (-) True G141082
TU208235 lncRNA downstream 120288 22539920 ~ 22540327 (-) True G141080
TU208234 lncRNA downstream 120701 22539593 ~ 22539914 (-) True G141079
TU208233 lncRNA downstream 121048 22539367 ~ 22539567 (-) True G141078
TU208522 lncRNA upstream 77400 22739641 ~ 22740927 (-) True G141283
TU208585 lncRNA upstream 168673 22830914 ~ 22831421 (-) True G141307
TU208599 lncRNA upstream 216491 22878732 ~ 22890133 (-) True G141319
TU208601 lncRNA upstream 221821 22884062 ~ 22890133 (-) False G141319
TU208609 lncRNA upstream 226279 22888520 ~ 22894015 (-) True G141324
XM_043220550.1 mRNA downstream 93484 22557504 ~ 22567131 (-) True opn8a
XM_043219692.1 mRNA downstream 108341 22541777 ~ 22552274 (-) True opn8b
XM_043219741.1 mRNA downstream 154813 22498745 ~ 22505802 (-) False LOC122324950
XM_043219740.1 mRNA downstream 154813 22498745 ~ 22505802 (-) True LOC122324950
XM_043219319.1 mRNA downstream 190345 22394835 ~ 22470270 (-) False atad2b
XM_043219919.1 mRNA upstream 7801 22670042 ~ 22683646 (-) True clic5b
XM_043218592.1 mRNA upstream 107678 22769919 ~ 22776432 (-) True lin9
XM_043220475.1 mRNA upstream 114880 22777121 ~ 22791942 (-) True parp1
XM_043219706.1 mRNA upstream 130996 22793237 ~ 22802967 (-) True si:dkey-206f10.1
XM_043219255.1 mRNA upstream 178655 22840896 ~ 22845553 (-) True pomcb
unassigned_transcript_2512 other downstream 544826 22115707 ~ 22115789 (-) True trnal-uaa_37
unassigned_transcript_2511 other downstream 545495 22115038 ~ 22115120 (-) True trnal-uaa_36
TU208103 other downstream 547571 22112602 ~ 22113044 (-) True G140972
TU207994 other downstream 813698 21845806 ~ 21846917 (-) False LOC122325102
TU207987 other downstream 819147 21841113 ~ 21841468 (-) True G140883
XR_006247154.1 other upstream 726928 23389169 ~ 23401391 (-) False mcm9
XR_006247155.1 other upstream 728224 23390465 ~ 23401391 (-) False mcm9
XR_006247156.1 other upstream 728226 23390467 ~ 23401391 (-) False mcm9
XR_006247216.1 other upstream 1129836 23792077 ~ 23823050 (-) False tbc1d32
TU208856 other upstream 1342446 24004687 ~ 24006665 (-) True G141502

Expression Profile