RNA id: TU208798


Basic Information

Item Value
RNA id TU208798
length 2147
lncRNA type sense_over
GC content 0.43
exon number 3
gene id G141465
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 23949261 ~ 24007460 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atgcttttgaacagtagtatacatttatatttcttcTCGTGCTGCTACGTTTTCTGATCCTAATGTGGGACTGGACAAGTCACGCTTTCTCAATGCATACCTGCATACCAGCAGCGAGAGTTTCCCTCCTCCATTTTCTCCACCCAGGACTCGTTCCAAGAATGAGCAAAGTCGATCAAGAGCACCAGCTGGATGAGGATGAAACAAAACGCTCCAGACATGCCTATGTAAAACCAGACTGGAAGAGACCCGGCAGAAGATCACCATTACATTctcacaaataaatacaaagatcAACAAGTCTCACCACTTAAGCTAGCTAAACACTgtgccatttattattattaatttattatttttttacatataaattccACTGCATAACATACAATGGGCGCAAAGCTATGtaaggtaataaaataaaactttaccCGTAGTAAAAGGGCCTTCGGGAATGAAGAAAGCCCCGACTGTAATAGCAGTGGCAGCCGCGAACTTGAAAAACCAAAACCTGTGGaagatattaatacatttagaaatgacTTTCATTTGCTAAAGCGGCGTCTTGCTCATCAGGTCAGAGCAACGCCTGCGTACCCGTTATGCACAGCGGCTCTCGGATCCTGGCTGCTCTTGACCTTTACCATGATGAGAGAGAAAAGCAGGAAAAACATGGCCATCCCGAAGCACACGCGATACACGGCCTTATAGCCCACCAGCACGTCGCAGTTCACGTGACCCTCCACTCCCGGGATGGACGAGCCCATCCCTCCTTCACAAAAGCCCGGAATCTCTTCAGGTGCCCCTCCATGCCCGGCATGAGCATGATGCAGGCGATGCCCACCCCCAGCAGCATGAAGAAGGCGTAGATCAGCCGAGTGACCGTGGAGTTGTTTCCGCTCGGGCAGCATCTGCACAGCAGGCAGGGAGCGCTGCCGCAAAGGCAAGGGATCTGCAGACGGAAAAATTATACGAGACGTTTCAgagggtttgtttttttgagacCCTAGGGCTATCACGGTCGTTTTATTTCGGCATGACTTGAACATTTTCAggtagtacacacacatatgcgtagatagatagatatagatatgaCTTTTAATTAggcaggggaaaaaaatctatttttttttcagtactttTTGCAGATTAGTTGATAAATTACACAGTTTTAACAAAGGAATAAGATGaatattatctatctatctctctctctctctgtctcacacacacacacactctctctctctgtctctgtctgtctctgtctctctctctctctctctctctctctctctctgtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctttctctctctctctctctctctctctctctctctctctctctctctctctctctctctctttctcacataTGTGTTTATGaagtcacttttttaaaattcagatgGCATAATTGTTGTACCTCTACATGTTGTGGATTGTATGGGAACTTataagcgcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcacacacacacacattcaatacGTGTATGAACTGCGACCCCATGCACTGTGACCTCAACGTGATGTGGGATTCATGtcaataattctaataataaatgtatgatgatcaaaatataaatatatctatatttcatGTAAAGTTAGTTACCATGAACCATAACTGAAGACATCTGTAACACGTATATGAATGTATTGTCATGCTTTAATGGACATATCCAACcaatgcattttactgtaaagcaataacacgagaaaaaaaaaaaagatatataaatatatatatgtgaaaagAATGATTCCTGTACATTTGTCATATGAAACTTTGAGAAAggaatgtttaaaatatgtcaCAAATTAAACAATGCCATTTATACCCGTTTCATAGTTTTTGTGGCCTGCGCCgtgttttaaatgatatgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208797 lncRNA upstream 434 23947616 ~ 23948827 (+) True G141464
TU208758 lncRNA upstream 166541 23782508 ~ 23782720 (+) True G141439
TU208755 lncRNA upstream 177835 23771095 ~ 23771426 (+) True G141436
TU208716 lncRNA upstream 377807 23571095 ~ 23571454 (+) True G141403
TU208424 lncRNA upstream 540437 23403021 ~ 23408824 (+) False G141216
XR_006247175.1 lncRNA downstream 14674 24022134 ~ 24032657 (+) True LOC122324430
TU208888 lncRNA downstream 416580 24424040 ~ 24424479 (+) True G141523
TU208890 lncRNA downstream 433454 24440914 ~ 24493381 (+) False G141524
TU208899 lncRNA downstream 473834 24481294 ~ 24482661 (+) False pals1b
TU208909 lncRNA downstream 492631 24500091 ~ 24504465 (+) True G141534
XM_043219232.1 mRNA upstream 3307 23940664 ~ 23945954 (+) True hsf2
XM_043219344.1 mRNA upstream 101758 23844087 ~ 23847503 (+) True gja1b
XM_043219345.1 mRNA upstream 101758 23844122 ~ 23847503 (+) False gja1b
XM_043219349.1 mRNA upstream 105771 23840772 ~ 23843490 (+) True gja13.1
XM_043219350.1 mRNA upstream 113408 23832318 ~ 23835853 (+) True gja12.1
XM_043218630.1 mRNA downstream 114397 24121857 ~ 24348875 (+) True fut8b
XM_043218629.1 mRNA downstream 255029 24262489 ~ 24267233 (+) False LOC122324313
XM_043218628.1 mRNA downstream 255030 24262490 ~ 24268335 (+) True LOC122324313
XM_043220033.1 mRNA downstream 372551 24380011 ~ 24453951 (+) True gphnb
XM_043220035.1 mRNA downstream 372551 24380011 ~ 24453951 (+) False gphnb
unassigned_transcript_2513 other upstream 848973 23100206 ~ 23100288 (+) True trnal-cag_35
TU208163 other upstream 1431586 22506767 ~ 22517675 (+) False fkbp1b
XR_006247241.1 other upstream 1472487 22471786 ~ 22476774 (+) False ubxn2a
TU207855 other upstream 2104560 21844146 ~ 21844701 (+) True G140785
XR_006247231.1 other upstream 2750642 21168775 ~ 21198619 (+) False ipo13b
TU208810 other downstream 65411 24072871 ~ 24074423 (+) False G141475
TU208811 other downstream 65411 24072871 ~ 24074423 (+) False G141475
TU208812 other downstream 65411 24072871 ~ 24074423 (+) True G141475
TU208889 other downstream 432783 24440243 ~ 24493381 (+) True G141524
XR_006247270.1 other downstream 961420 24968880 ~ 24992667 (+) False LOC122325234

Expression Profile