RNA id: TU208799


Basic Information

Item Value
RNA id TU208799
length 1792
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G141466
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 24004687 ~ 24086637 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tatatatatatatatttatgtatatgtatcaaaaatgtatgtataaaaattaagtgtttttgaACCAGAAATCTTATTTCTGATCCCATTTGGCAGATATtacctctttttttaattaattaaaatgatgaggtctgaaaatcaaaatgtaaaaaaatctgaatgaagTGAGTTCAagcttaaaacaagaacaaatatctgCGGTTGCGTTCAGAAAAAtgtaccttttcaaaaacctcttttcttttctcgaGCCTGTTTAAGGAAGAACCCTCGTCCTTGTTGTCGAGTCGTTTTTGCTTCAAGAACGCACTGGAAAACGAGCCCGAAGACGCAAAGGAGATCATTTTTTGCAGTGCGAGCACAACCACCGTCGGCGCGCGCGCCTGTGACtcgcagtgcattgtgggaagcTCCGCCGAGGTGATCTCCGGACGGTCGTCTCCATGGCAACCGCGGCCCTTGCCCGTTTCCGACCCGGCAGCTACCGAAACCAAAACCTCCGCGGAGACGTTTCCCGTCATGCAGATGCGAACGTGACTCAAAGATTGTGGAGGTCCGCAGCTGCCTCCGCGTCGGGGGAACGGGGATTATGCAATATAAGCACTGCTCAGAGTCCGGACGCCGCTGTATAGCAATAGGATGCTGACTTGTAGTGGACACTATGCAGGGAGGATGTGGCTGCGCTTCCAGACTCGAACGCAGAGTGGAAGACGGAACTCAGCTTCATCCGGAGACGGTTACCGTGGTTCCTCTCGACTTTTCGCACAGACACTTCACGTATATGCATTTCCGACTGATACAGgaacatttaaagaacaaaaccGAGCATAGATGAGTATTCTCTAGTGccattttctaataaaaatggGGTTAAATCTCACAAAAAACATGTCCATGGTATATTTCACCCCAAATCAAAAACCGACGTTGTATTTTGCACATGAAGTCTGTTTTTGGGccattaaaaatggtttatcGTGACACTGATTTAAAGAGAGTTAAGCACTTTTCCCCACTTtgatttattgtataattataatgcattgaaGCCTGTTTCTAGCCAAgaataattgtgattatttttttatctcaaagatatgactttttttctcccagAATTCGTGATTGACTCAGCATTCTGACcttcatcagatttttttttgtactttatttatgtatttgtttatttattgccaaatattacaaatatttaaaaaaggaaataataggcttttttcccccccataCCTTTTCCTCATAACTCGTTTAAATCTTGCAACTTCtgaaattaagtgttttttttttttttttcaaaatagcaAGTTGCATGAAAAAAGGCATGAACTGTCTAATATACTgtcatattttcttaaaaacaaataaatgacgAGCATTCGTGGgaaatgtgcttaattgtcGTGCAAAATGAACGATGCCGTGAAAAAACTCTTGGTTCTTACTAATAGGCTTCATTTTCTTCGTGCAAAATATAAtatctttatttactttatttcattttggggtgaactttAACCTGGACGTTTTCTAGACAGGTTTTGAAAGATTTACCCTATAATGCACATGTTGATAATGCAGACTTTTACAGTTGTTGGAAGTAATTTGTTCTTTAGATAATTTGTACATACAGTACGTTTGAGATGCTTCGATCATGACTGATTTACCATCAGTTGAACTGGTGGGCTCTTTATTTGAGACTTGATTTGAGATTTTGTtgtatatgaacacacacacacacacacacacacacacacacacacacacacataca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208802 lncRNA upstream 38098 23954894 ~ 23966589 (+) True G141469
TU208797 lncRNA upstream 55860 23947616 ~ 23948827 (+) True G141464
TU208758 lncRNA upstream 221967 23782508 ~ 23782720 (+) True G141439
TU208755 lncRNA upstream 233261 23771095 ~ 23771426 (+) True G141436
TU208716 lncRNA upstream 433233 23571095 ~ 23571454 (+) True G141403
TU208888 lncRNA downstream 337403 24424040 ~ 24424479 (+) True G141523
TU208890 lncRNA downstream 354277 24440914 ~ 24493381 (+) False G141524
TU208899 lncRNA downstream 394657 24481294 ~ 24482661 (+) False pals1b
TU208909 lncRNA downstream 413454 24500091 ~ 24504465 (+) True G141534
TU208910 lncRNA downstream 413887 24500524 ~ 24504465 (+) False G141534
XM_043218624.1 mRNA upstream 639 23971080 ~ 24004048 (+) True slc24a4b
XM_043219232.1 mRNA upstream 58733 23940664 ~ 23945954 (+) True hsf2
XM_043219344.1 mRNA upstream 157184 23844087 ~ 23847503 (+) True gja1b
XM_043219345.1 mRNA upstream 157184 23844122 ~ 23847503 (+) False gja1b
XM_043219349.1 mRNA upstream 161197 23840772 ~ 23843490 (+) True gja13.1
XM_043218630.1 mRNA downstream 35220 24121857 ~ 24348875 (+) True fut8b
XM_043218629.1 mRNA downstream 175852 24262489 ~ 24267233 (+) False LOC122324313
XM_043218628.1 mRNA downstream 175853 24262490 ~ 24268335 (+) True LOC122324313
XM_043220033.1 mRNA downstream 293374 24380011 ~ 24453951 (+) True gphnb
XM_043220035.1 mRNA downstream 293374 24380011 ~ 24453951 (+) False gphnb
unassigned_transcript_2513 other upstream 904399 23100206 ~ 23100288 (+) True trnal-cag_35
TU208163 other upstream 1487012 22506767 ~ 22517675 (+) False fkbp1b
XR_006247241.1 other upstream 1527913 22471786 ~ 22476774 (+) False ubxn2a
TU207855 other upstream 2159986 21844146 ~ 21844701 (+) True G140785
XR_006247231.1 other upstream 2806068 21168775 ~ 21198619 (+) False ipo13b
TU208889 other downstream 353606 24440243 ~ 24493381 (+) True G141524
XR_006247270.1 other downstream 882243 24968880 ~ 24992667 (+) False LOC122325234
TU209259 other downstream 1077402 25164039 ~ 25165171 (+) False irf4l
TU209346 other downstream 1135330 25221967 ~ 25223109 (+) True G141775
TU209343 other downstream 1196631 25283268 ~ 25304671 (+) False fig4a

Expression Profile