RNA id: TU208812


Basic Information

Item Value
RNA id TU208812
length 568
RNA type TUCP
GC content 0.61
exon number 2
gene id G141475
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 24072871 ~ 24074423 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgggtgtgttcgagaggaggggcgtggtatcggtcaggtctggcggcgtgtgacgaggcacacctgaaggggattagccttgtcaccgtcgccgttaaatacctgaccgcgtctctcctcgggagaccggtctcttcccccgtgcatgcacgctggtgtcctcgtgggtccaggaagggtgcgcgatggacctcaccccgccgtccgagaagtgcgtcgtgggacccccgtagtccaggctgtgagcacacagctcatcccactctgccgccggagcaaagaaacgacggagacgccgcggaagaagccgccgcccctcgcgccccgggccagaaaaaggggagcgcgtgcgaccgccggactccgccccttacctggacccttcccccctggaacacggcctcaaccttcactttccccgcggcacgacgaggacaccagatcccccttttatttggacacttttcccctggacactttattattttgtattattatttattttgttaataataaaagcctctccgaggcctgacgccacgcccactgtgtctgtcgttggctcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247175.1 lncRNA upstream 40214 24022134 ~ 24032657 (+) True LOC122324430
TU208798 lncRNA upstream 65411 23949261 ~ 24007460 (+) True G141465
TU208802 lncRNA upstream 106282 23954894 ~ 23966589 (+) True G141469
TU208797 lncRNA upstream 124044 23947616 ~ 23948827 (+) True G141464
TU208758 lncRNA upstream 290151 23782508 ~ 23782720 (+) True G141439
TU208888 lncRNA downstream 349617 24424040 ~ 24424479 (+) True G141523
TU208890 lncRNA downstream 366491 24440914 ~ 24493381 (+) False G141524
TU208899 lncRNA downstream 406871 24481294 ~ 24482661 (+) False pals1b
TU208909 lncRNA downstream 425668 24500091 ~ 24504465 (+) True G141534
TU208910 lncRNA downstream 426101 24500524 ~ 24504465 (+) False G141534
XM_043218624.1 mRNA upstream 68823 23971080 ~ 24004048 (+) True slc24a4b
XM_043219232.1 mRNA upstream 126917 23940664 ~ 23945954 (+) True hsf2
XM_043219344.1 mRNA upstream 225368 23844087 ~ 23847503 (+) True gja1b
XM_043219345.1 mRNA upstream 225368 23844122 ~ 23847503 (+) False gja1b
XM_043219349.1 mRNA upstream 229381 23840772 ~ 23843490 (+) True gja13.1
XM_043218630.1 mRNA downstream 47434 24121857 ~ 24348875 (+) True fut8b
XM_043218629.1 mRNA downstream 188066 24262489 ~ 24267233 (+) False LOC122324313
XM_043218628.1 mRNA downstream 188067 24262490 ~ 24268335 (+) True LOC122324313
XM_043220033.1 mRNA downstream 305588 24380011 ~ 24453951 (+) True gphnb
XM_043220035.1 mRNA downstream 305588 24380011 ~ 24453951 (+) False gphnb
unassigned_transcript_2513 other upstream 972583 23100206 ~ 23100288 (+) True trnal-cag_35
TU208163 other upstream 1555196 22506767 ~ 22517675 (+) False fkbp1b
XR_006247241.1 other upstream 1596097 22471786 ~ 22476774 (+) False ubxn2a
TU207855 other upstream 2228170 21844146 ~ 21844701 (+) True G140785
XR_006247231.1 other upstream 2874252 21168775 ~ 21198619 (+) False ipo13b
TU208889 other downstream 365820 24440243 ~ 24493381 (+) True G141524
XR_006247270.1 other downstream 894457 24968880 ~ 24992667 (+) False LOC122325234
TU209259 other downstream 1089616 25164039 ~ 25165171 (+) False irf4l
TU209346 other downstream 1147544 25221967 ~ 25223109 (+) True G141775
TU209343 other downstream 1208845 25283268 ~ 25304671 (+) False fig4a

Expression Profile