RNA id: TU208915


Basic Information

Item Value
RNA id TU208915
length 1342
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G141539
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 24522506 ~ 24523847 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGGTCATGAAAAGttcataatgcaataataattttttgcttACGTAATTGCCATGAAAATGTCAcaatcccccccaaaaaagtaattattcatTAGATTAATCTGGCAATGCTCCACTAATCATAATTTACCAACACTGATGATTTGTATCACTAATTCAAAAGTAAAGATAAAACCACAGCATGTGAACGTTAGCACTGATTAGAGTTAAAGAATAATTCTGCAAGCTGCAGAAGGACATAAATGCTGGACGAAAAGAGATTTCACCTTAATATTTTGGTCTACCTCAAAGACGTCCCACAGCAAAAGGCATCCCTTCTCACGTTTAACTGTGCCGTATTACTGCGAACACGAGACATCAATCCATCCCGCTGCTTTAAACACcacaaaagaaattcataaaactGTAATAGAAGGCAGATTATTAttgcacatgcaaaaaaacattaacataaaaaaaagaaaagctactAAAATGATTATCAGCTTCCCTAAGAACCTtcaatatagtaaaataaactaaaaaaaaaaaaaaaaaagttttattaatatacattaaaacagaCGTGATTAGTATTGCATAAATGAACTGAAGCTGAAGGTCTTGTTCTACCaaatactaaaaatgaacactaaaaaatgaaaaactggaTTGCCGGCTTTTCTCGTCTTATCGCGTCTGCGCATATTTTAAGCGACAGAATTTACAGAAACATTCACAGAAACTGGAACTTCCCTTTCGGGCTCGTACTAAACccgtgacatttttttttttagcggaGAGTGAATCTCGCCAAACCGGTCAGAGCATGCTTCACCCCGAAGTcaaaaaggggaaaaagacAAGACAATAAAGCCTATTTTTTGAAAAActgcagtgcaaaaaaaataaataactaacaCGTTGCTGAAATTAATTACCTTTGTGAGGTACGCCAATattgcagttgttttaaaagaaacggGTCTTATTTCTTTACTcaacatgtatataatttttctttatgcCCGAGAAGGACTGAGGTGAATTCTGTATTTTAGACACAGTTATCGGCTTGTTTGCCACGTAGCGAACACTTTTAATGCTCGTACGCGTTTCTACGCGAGGCAAACAGGCACCGGAGGTTCACGGTTTGATATGGCAGAAACTCAGAAGAGAAAGAGCAGGGTGCACTGGCCTGACCGGGGAGTTACGGGCATCTATGAGGACGTTCATGTTTATGGCCGTGTTTGCTGCGATTGTTTATGACACGAGAATCTCACAAAGCCGAGTCCAGAAGTCTAGGTCATATTTCATACAAAATccaaaatatgtgtgtttttattaacggtaatactata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208914 lncRNA upstream 284 24521973 ~ 24522222 (+) True G141538
TU208912 lncRNA upstream 3015 24519173 ~ 24519491 (+) True G141536
TU208911 lncRNA upstream 4139 24518086 ~ 24518367 (+) True G141535
TU208909 lncRNA upstream 18041 24500091 ~ 24504465 (+) True G141534
TU208910 lncRNA upstream 18041 24500524 ~ 24504465 (+) False G141534
TU208895 lncRNA downstream 4054 24527901 ~ 24532599 (+) True G141526
TU208893 lncRNA downstream 13418 24537265 ~ 24543897 (+) True G141525
TU208935 lncRNA downstream 47569 24571416 ~ 24572571 (+) True G141553
TU208936 lncRNA downstream 47569 24571416 ~ 24647428 (+) False G141553
TU208942 lncRNA downstream 49695 24573542 ~ 24575677 (+) True G141554
XM_043219081.1 mRNA upstream 4774 24511900 ~ 24517732 (+) True hsp90ab1
XM_043219082.1 mRNA upstream 5514 24511899 ~ 24516992 (+) False hsp90ab1
XM_043219087.1 mRNA upstream 31132 24485743 ~ 24491374 (+) True eif2s1b
XM_043220551.1 mRNA upstream 40194 24456990 ~ 24482312 (+) True pals1b
XM_043218613.1 mRNA downstream 23240 24547087 ~ 24557704 (+) True tmem151ba
XM_043220510.1 mRNA downstream 85171 24609018 ~ 24610945 (+) True thbd
XM_043220509.1 mRNA downstream 87222 24611069 ~ 24614897 (+) True LOC122325457
XM_043220508.1 mRNA downstream 91716 24615563 ~ 24619884 (+) True LOC122325456
XM_043220225.1 mRNA downstream 168054 24691901 ~ 24698132 (+) False aida
TU208889 other upstream 29125 24440243 ~ 24493381 (+) True G141524
TU208810 other upstream 448083 24072871 ~ 24074423 (+) False G141475
TU208811 other upstream 448083 24072871 ~ 24074423 (+) False G141475
TU208812 other upstream 448083 24072871 ~ 24074423 (+) True G141475
unassigned_transcript_2513 other upstream 1422218 23100206 ~ 23100288 (+) True trnal-cag_35
XR_006247270.1 other downstream 445033 24968880 ~ 24992667 (+) False LOC122325234
TU209259 other downstream 640192 25164039 ~ 25165171 (+) False irf4l
TU209346 other downstream 698120 25221967 ~ 25223109 (+) True G141775
TU209343 other downstream 759421 25283268 ~ 25304671 (+) False fig4a
XR_006247151.1 other downstream 1252628 25776475 ~ 25828915 (+) False LOC122324336

Expression Profile