RNA id: TU209086


Basic Information

Item Value
RNA id TU209086
length 1449
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G141622
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 24522383 ~ 24523831 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ataaaaacacacatattttggATTTTGTATGAAATATGACCTAGACTTCTGGACTCGGCTTTGTGAGATTCTCGTGTCATAAACAATCGCAGCAAACACGGCCATAAACATGAACGTCCTCATAGATGCCCGTAACTCCCCGGTCAGGCCAGTGCACCCTGCTCTTTCTCTTCTGAGTTTCTGCCATATCAAACCGTGAACCTCCGGTGCCTGTTTGCCTCGCGTAGAAACGCGTACGAGCATTAAAAGTGTTCGCTACGTGGCAAACAAGCCGATAACTGTGTCTAAAATACAGAATTCACCTCAGTCCTTCTCGGgcataaagaaaaattatatacatgttgAGTAAAGAAATAAGACccgtttcttttaaaacaactgcaatATTGGCGTACCTCACAAAGGTAATTAATTTCAGCAACGtgttagttatttattttttttgcactgcagTTTTTCAAAAAATAGGCTTTATTGTCTTgtctttttcccctttttgACTTCGGGGTGAAGCATGCTCTGACCGGTTTGGCGAGATTCACTCtccgctaaaaaaaaaaatgtcacggGTTTAGTACGAGCCCGAAAGGGAAGTTCCAGTTTCTGTGAATGTTTCTGTAAATTCTGTCGCTTAAAATATGCGCAGACGCGATAAGACGAGAAAAGCCGGCAAtccagtttttcattttttagtgttcatttttagtatttGGTAGAACAAGACCTTCAGCTTCAGTTCATTTATGCAATACTAATCACGtctgttttaatgtatattaataaaacttttttttttttttttttagtttattttactatattgaAGGTTCTTAGGGAAGCTGATAATCATTTTagtagcttttcttttttttatgttaatgtttttttgcatgtgcaaTAATAATCTGCCTTCTATTACagttttatgaatttcttttgtgGTGTTTAAAGCAGCGGGATGGATTGATGTCTCGTGTTCGCAGTAATACGGCACAGTTAAACGTGAGAAGGGATGCCTTTTGCTGTGGGACGTCTTTGAGGTAGACCAAAATATTAAGGTGAAATCTCTTTTCGTCCAGCATTTATGTCCTTCTGCAGCTTGCAGAATTATTCTTTAACTCTAATCAGTGCTAACGTTCACATGCTGTGGTTTTATCTTTACTTTTGAATTAGTGATACAAATCATCAGTGTTGGTAAATTATGATTAGTGGAGCATTGCCAGATTAATCTAatgaataattacttttttgggggggattgTGACATTTTCATGGCAATTACGTaagcaaaaaattattattgcattatgaaCTTTTCATGACCGCTACCttaatatgtgtatgtttgatttttttttttttttttttttttttgtgtttgtgtgtgtgtgtaacacaagttgattttttttttttttaatgaaaatgaaagcattaataaaaaaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209098 lncRNA downstream 172 24521977 ~ 24522211 (-) True G141634
TU209058 lncRNA downstream 4640 24267372 ~ 24517743 (-) False LOC122324315
TU209073 lncRNA downstream 6484 24264780 ~ 24515899 (-) False LOC122324315
TU209074 lncRNA downstream 6484 24264780 ~ 24515899 (-) False LOC122324315
TU209091 lncRNA downstream 78193 24440791 ~ 24444190 (-) True G141627
TU209088 lncRNA upstream 21185 24545016 ~ 24545549 (-) True G141624
TU209133 lncRNA upstream 88035 24611866 ~ 24616647 (-) True LOC122325459
XR_006247301.1 lncRNA upstream 90440 24614271 ~ 24616410 (-) False LOC122325459
TU209141 lncRNA upstream 168171 24692002 ~ 24692486 (-) True G141662
TU209121 lncRNA upstream 201111 24724942 ~ 24726684 (-) True G141648
XM_043219080.1 mRNA downstream 11853 24492752 ~ 24510530 (-) True rbm25b
XM_043219689.1 mRNA downstream 36895 24482072 ~ 24485488 (-) True atp6v1d
XM_043218633.1 mRNA downstream 261214 24254393 ~ 24261169 (-) False LOC122324315
XM_043218632.1 mRNA downstream 261325 24254393 ~ 24261058 (-) True LOC122324315
XM_043218826.1 mRNA downstream 463546 24014150 ~ 24058837 (-) True tmem121ab
XM_043219085.1 mRNA upstream 238 24524069 ~ 24532363 (-) False slc35b2
XM_043219084.1 mRNA upstream 238 24524069 ~ 24532363 (-) True slc35b2
XM_043219086.1 mRNA upstream 8673 24532504 ~ 24544049 (-) True nfkbie
XM_043218614.1 mRNA upstream 31917 24555748 ~ 24569128 (-) True tcte1
XM_043220338.1 mRNA upstream 51517 24575348 ~ 24582578 (-) False rnf8
TU209065 other downstream 261347 24257786 ~ 24261036 (-) False LOC122324315
TU208856 other downstream 515718 24004687 ~ 24006665 (-) True G141502
XR_006247216.1 other downstream 699333 23792077 ~ 23823050 (-) False tbc1d32
XR_006247155.1 other downstream 1120992 23390465 ~ 23401391 (-) False mcm9
TU209099 other upstream 2051 24525882 ~ 24530875 (-) False slc35b2
TU209125 other upstream 47582 24571413 ~ 24647421 (-) True G141651
TU209178 other upstream 323834 24847665 ~ 24851761 (-) False rhpn1
TU209665 other upstream 804749 25328580 ~ 25329605 (-) False wasf1
TU209701 other upstream 807095 25330926 ~ 25377416 (-) False wasf1

Expression Profile