RNA id: XR_006247205.1


Basic Information

Item Value
RNA id XR_006247205.1
length 577
RNA type transcript
GC content 0.47
exon number 3
gene id LOC122324601
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 25747667 ~ 25754008 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAGCTAACGTGAAACATGTTTGTCTGTTACTGTATTCATGGTTTATTTACAATCTATTAGATTGTATAACAGATTAATATCTATTAAATCTATAAATGGCTCTGTTTTGGTTTGAGGGTTGTGTATGCCAGTtaactttggataaaagcatccatTAACGCCGTTCAGGACTCTTTAGATGATGCACCCGTCACTAGCTGCACGTGTTTCTGTGAGCCACTGCCGTAAAACTAACAGTGTGTTGCACTTCAAGGCAAAGGGCGAGACCCAGACAGACGTGGTTCTGAAGGCCTCCTCCCGTGAGGTTGTATGTTAATCAGCTGTATTTTCTGAGTCTTGTCTTGGTGCCTTTGTTCTGATCACGAGGGTTTTTCACAGCAGAAGTGTCACTTTGTTGTAGATGAGAGCGAGGCTGTTACTCCGGCCGCTCGGGGGTTAACCTCGTCCGGCTGCAGGTTCAGAGCGTGGACAAGCCTTTATACCGCGGGACATATCACTGCTTCCAGTCCATCGTCCGGCAGGAGTCTGTGTCTGGTCTCTATAAAGGCCTCGGCTCGCCCATGATGGGCCTGACCT

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209743 lncRNA downstream 154111 25474206 ~ 25596812 (-) True G142015
TU209776 lncRNA downstream 171662 25514247 ~ 25579261 (-) True G142042
TU209744 lncRNA downstream 222962 25523201 ~ 25527961 (-) True G142016
TU209754 lncRNA downstream 291691 25457409 ~ 25459232 (-) True G142026
TU209730 lncRNA downstream 319237 25430799 ~ 25431686 (-) True G142009
TU210004 lncRNA upstream 84695 25838372 ~ 25865079 (-) False G142201
TU209997 lncRNA upstream 109756 25863433 ~ 25865079 (-) False G142201
TU210005 lncRNA upstream 109756 25863433 ~ 25865079 (-) True G142201
TU210006 lncRNA upstream 109981 25863658 ~ 25865079 (-) False G142201
TU210002 lncRNA upstream 110193 25863870 ~ 25865079 (-) False G142201
XM_043220313.1 mRNA downstream 119988 25626652 ~ 25630935 (-) True LOC122325306
XM_043220315.1 mRNA downstream 120704 25626652 ~ 25630219 (-) False LOC122325306
XM_043220308.1 mRNA downstream 135647 25609316 ~ 25615276 (-) True hsp90aa1.1
XM_043220306.1 mRNA downstream 141778 25597113 ~ 25609145 (-) True hsp90aa1.2
XM_043220307.1 mRNA downstream 142777 25597113 ~ 25608146 (-) False hsp90aa1.2
XM_043220555.1 mRNA upstream 823 25754500 ~ 25776163 (-) True LOC122325519
XM_043218660.1 mRNA upstream 134492 25888169 ~ 25926619 (-) False pak5
XM_043218661.1 mRNA upstream 135798 25889475 ~ 25935072 (-) False pak5
XM_043218662.1 mRNA upstream 135798 25889475 ~ 25926950 (-) False pak5
XM_043218663.1 mRNA upstream 135798 25889475 ~ 25926618 (-) False pak5
TU209806 other downstream 100830 25648492 ~ 25650093 (-) True G142058
unassigned_transcript_2514 other downstream 116980 25633860 ~ 25633943 (-) True trnas-gcu_30
TU209689 other downstream 342981 25393120 ~ 25407942 (-) False mettl24
TU209680 other downstream 342981 25396208 ~ 25407942 (-) False mettl24
TU209701 other downstream 373507 25330926 ~ 25377416 (-) False wasf1
TU210061 other upstream 297152 26050829 ~ 26054469 (-) True LOC122324466
XR_006247179.1 other upstream 298529 26052206 ~ 26054369 (-) False LOC122324466
XR_006247180.1 other upstream 298529 26052206 ~ 26054369 (-) False LOC122324466
XR_006247182.1 other upstream 298529 26052206 ~ 26054178 (-) False LOC122324466
XR_006247181.1 other upstream 298529 26052206 ~ 26054178 (-) False LOC122324466

Expression Profile