RNA id: XR_006247180.1


Basic Information

Item Value
RNA id XR_006247180.1
length 1270
RNA type transcript
GC content 0.43
exon number 3
gene id LOC122324466
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 26050829 ~ 26054469 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttgttgtctgGTTTCCATGGCAGCAGCACAGTATGGAGTTCCTTCACTGGAGCTGTGAGGATGTTTCTCTCTGGATCGAGTCTCTTGGTTTCTCTCAGTATCAGGATCAGACCCGAGTGGATTCTACAGAACAACAGATGAATTAGTGTCGACGTGCTGTAGAGTTTAGAGTACTGGACAcgcgacctttgacctctgcaGACGGTGGAGAAGCAGCTTTCGCTCCGTCATCATCTCCGCTTGTGCTTTGTTAGCGTCACGTAAGGAAAACGCAGGCTTCCCTTCATCAGCGATATCTGTTGCCTCCGTGCCAGACTCCGCCGAGAATCAACCTCCGTCTGAGAGAAACGATGCTCTGATTCCCGTCTCACTGATCTTTTCAGCTGAAAAACAGCTCAGATTCTCCTGGAAAGCCGTGTTCAGGAGGTTACAGATcagcataattaaaatatgataagTAGTGTAATTATTTTGGTTactttgattatatttttgattcgttttcttaatttaaatcTAACTTTGAATCGTTTTCAAACATTTAGAGCAGGTGAACCTTACAGTGGTATTTGATACAGATTGTAATCTAAAATACATCCTTAAAGCAAATCTAAATGGGAACCCTAACTATAAACTAAATACAGTTAATATTATAACCTGCACTGTAACCAGGACACCTTAGATGAAAGTCTTATGTTTCTTTGTAACTCTGAGAATGTGTTCAGGACTCATTAAAGACCTTTCCTTCTTCAGGAGTGTTTCACTCAGAATCACATCACGGGCAGAAAACTGATTCACGTCAACTGTTTCAATCTACCACGACTAGGAATCACCGACTTCCAGCACATGAAGCTGATCTCAGCTCAGGTCAGAGGGCTGCTGGGCGTCTCGGAGCGTCTCTGGAAGCAGAGTGTGGCTGATCCTCTTCATGATGACCGGACGCTGTTCCTGCAGATGAAGAGCCGGAGCGGTCAGCAGACAGAGTCCTTCACTTATGAGCGGTTCCTCAAGAACAAGAGCCAAGAAGATTCTCTCAGAAGAGCGGGACTCCTGCAATAAACAGACAGGAAATGTGTCTTTCGGTGTCCTTACTCCTTCAGAATCTACTACACTGCAAAACATTATTCTCTTACAtagtatatttagaaatatctacatttactgtcaaagtaaaatgactttatgattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210062 lncRNA downstream 19008 26017371 ~ 26033198 (-) True G142245
TU210080 lncRNA downstream 39958 26010650 ~ 26012248 (-) True G142261
TU210079 lncRNA downstream 41818 26006269 ~ 26010388 (-) True G142260
TU210006 lncRNA downstream 187127 25863658 ~ 25865079 (-) False G142201
TU210159 lncRNA upstream 34087 26088456 ~ 26090453 (-) False pgfa
TU210160 lncRNA upstream 34087 26088456 ~ 26090453 (-) False pgfa
TU210161 lncRNA upstream 34087 26088456 ~ 26090453 (-) False pgfa
TU210146 lncRNA upstream 95522 26149891 ~ 26159582 (-) False G142273
TU210125 lncRNA upstream 114165 26168534 ~ 26174879 (-) True G142273
XM_043220357.1 mRNA downstream 2439 26036394 ~ 26049767 (-) True lrfn5b
XM_043220153.1 mRNA downstream 75378 25963983 ~ 25976828 (-) True magl
XM_043218762.1 mRNA downstream 92504 25944134 ~ 25959702 (-) True LOC122324391
XM_043218659.1 mRNA downstream 125588 25889475 ~ 25926618 (-) False pak5
XM_043220296.1 mRNA upstream 18036 26072405 ~ 26079546 (-) False znf410
XM_043220293.1 mRNA upstream 18036 26072405 ~ 26079546 (-) False znf410
XM_043220295.1 mRNA upstream 18036 26072405 ~ 26079504 (-) False znf410
XM_043220294.1 mRNA upstream 18036 26072405 ~ 26079392 (-) True znf410
XM_043220270.1 mRNA upstream 28720 26083089 ~ 26087970 (-) True cipcb
XR_006247208.1 other downstream 298198 25750917 ~ 25754008 (-) False LOC122324601
XR_006247207.1 other downstream 298202 25752541 ~ 25754004 (-) False LOC122324601
XR_006247206.1 other downstream 298240 25752541 ~ 25753966 (-) False LOC122324601
XR_006247205.1 other downstream 298529 25750923 ~ 25753677 (-) False LOC122324601
XR_006247204.1 other downstream 298529 25752541 ~ 25753677 (-) False LOC122324601
XR_006247174.1 other upstream 34046 26088415 ~ 26096971 (-) False pgfa
XR_006247173.1 other upstream 34046 26088415 ~ 26096971 (-) True pgfa
TU210175 other upstream 131291 26185660 ~ 26187919 (-) True G142281
TU210168 other upstream 177655 26232024 ~ 26234245 (-) True G142278
unassigned_transcript_2516 other upstream 560274 26614643 ~ 26614730 (-) True trnas-gcu_32

Expression Profile