RNA id: TU210146


Basic Information

Item Value
RNA id TU210146
length 267
lncRNA type read_through
GC content 0.45
exon number 4
gene id G142273
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 26149891 ~ 26174879 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGACCCACTACAAGCGCTTTGTTGTGAAGATGTTTACGTTTGTAGATCCAACCTCACTGGCTCCTCTGCAGGAAACGATCTTCATCCACTGCAGTACAGAGGTGTGCCATCCGTCTTCTGGCTCTTGTGAGCAAAGCTGCACCAGGAAACGAAGAGCTACTCCTATCCAGGCCATCTTTGGTGAACCAACTGTGGTTTCTAGTGGACAAGTTACTCTAGTCATGTAAATctagttttttttttaataaaccttttGTGGATCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210159 lncRNA downstream 59438 26088456 ~ 26090453 (-) False pgfa
TU210160 lncRNA downstream 59438 26088456 ~ 26090453 (-) False pgfa
TU210161 lncRNA downstream 59438 26088456 ~ 26090453 (-) False pgfa
TU210064 lncRNA downstream 72818 26021487 ~ 26077073 (-) True G142247
TU210059 lncRNA downstream 94326 26018719 ~ 26055565 (-) True G142242
TU210125 lncRNA upstream 8952 26168534 ~ 26174879 (-) True G142273
TU210177 lncRNA upstream 30481 26190063 ~ 26191918 (-) True G142282
TU210174 lncRNA upstream 70724 26230306 ~ 26231483 (-) True G142280
TU210170 lncRNA upstream 72442 26232024 ~ 26232545 (-) False G142278
TU210171 lncRNA upstream 72442 26232024 ~ 26234245 (-) False G142278
XM_043220558.1 mRNA downstream 5472 26140448 ~ 26144419 (-) True LOC122325522
XM_043219108.1 mRNA downstream 15098 26132560 ~ 26134793 (-) True LOC122324577
XM_043219109.1 mRNA downstream 24443 26123353 ~ 26125448 (-) True LOC122324578
XM_043219107.1 mRNA downstream 36167 26111476 ~ 26113724 (-) True LOC122324575
XM_043219110.1 mRNA downstream 46668 26101333 ~ 26103223 (-) True LOC122324579
XM_043220561.1 mRNA upstream 8952 26168534 ~ 26176070 (-) True LOC122325525
XM_043220325.1 mRNA upstream 17319 26176901 ~ 26184090 (-) True actr10
XM_043219656.1 mRNA upstream 37997 26197579 ~ 26211185 (-) True LOC122324910
XM_043220188.1 mRNA upstream 55081 26214663 ~ 26216463 (-) True arf6a
XM_043219090.1 mRNA upstream 75837 26235419 ~ 26242824 (-) True fkbp3
XR_006247174.1 other downstream 52920 26088415 ~ 26096971 (-) False pgfa
XR_006247173.1 other downstream 52920 26088415 ~ 26096971 (-) True pgfa
TU210061 other downstream 95422 26050829 ~ 26054469 (-) True LOC122324466
XR_006247179.1 other downstream 95522 26052206 ~ 26054369 (-) False LOC122324466
XR_006247180.1 other downstream 95522 26052206 ~ 26054369 (-) False LOC122324466
TU210175 other upstream 26078 26185660 ~ 26187919 (-) True G142281
TU210168 other upstream 72442 26232024 ~ 26234245 (-) True G142278
unassigned_transcript_2516 other upstream 455061 26614643 ~ 26614730 (-) True trnas-gcu_32
TU210476 other upstream 763233 26922815 ~ 26924987 (-) True G142444
TU210568 other upstream 1070221 27229803 ~ 27256258 (-) False LOC122325335

Expression Profile