RNA id: TU210160



Basic Information


Item Value
RNA id TU210160
length 674
lncRNA type sense_over
GC content 0.51
exon number 5
gene id pgfa
representative False

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 26088415 ~ 26096971 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AGGAGTATCCCGGAGGGGTGGAGCACATCTATAATCCCGGCTGTGTTCCGCTGCGACGCTGCTCCGGATGCTGCAACGACGACAAACTGACCTGTTTCCCCGCCAGCACACACAACATCAGCatacagctgcTGAGAATAACTCCGTCGGAGAGGAGCAGGGAGTACGTGCTGCTTTCGTTTCTGGAGCACCGGAGCTGTGAGTGCAGGCCCAGAAGACAGCACCCGAGACACCAGCAcaggaggaggaggaagggcAAGCGCCGGAGGAGGCGGAGAGGAAGGACGCACAGGGATTGAGACGCAGCCCGGATCCGATGAACACTTTGGCAAATAGGCACAGACTCCATTCATCACACAAGCACTGGACCTTAGTGTGGTCAGTCTGACCCGGACCAGGACCAGGACCAGGACCAGGATCAGCTCAAGACCTGCTGCGGCTCCCAGATCAAACATCTGTTTATACCGACCGTAGCGGATCACACTGTCACTGAGAAACAATAAAGCTGCTAAAGCGAAGGAATCAGGCTTCATCAGGGAACAGACGAGAGAACAAATGTGAAATACCTCAGTGCTTTGAAAAAGAATCAAATCtactataaaaacatgaaatacaatGCAATGTGTGTTCATATCCCCATATGTgccttaatatattttataaaacaataaatt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU210064 lncRNA downstream 11383 26021487 ~ 26077073 (-) True G142247
TU210059 lncRNA downstream 32891 26018719 ~ 26055565 (-) True G142242
TU210062 lncRNA downstream 55258 26017371 ~ 26033198 (-) True G142245
TU210080 lncRNA downstream 76208 26010650 ~ 26012248 (-) True G142261
TU210079 lncRNA downstream 78068 26006269 ~ 26010388 (-) True G142260
TU210146 lncRNA upstream 59438 26149891 ~ 26159582 (-) False G142273
TU210125 lncRNA upstream 78081 26168534 ~ 26174879 (-) True G142273
TU210177 lncRNA upstream 99610 26190063 ~ 26191918 (-) True G142282
TU210174 lncRNA upstream 139853 26230306 ~ 26231483 (-) True G142280
TU210170 lncRNA upstream 141571 26232024 ~ 26232545 (-) False G142278
XM_043220270.1 mRNA downstream 486 26083089 ~ 26087970 (-) True cipcb
XM_043220296.1 mRNA downstream 8910 26072405 ~ 26079546 (-) False znf410
XM_043219110.1 mRNA upstream 10880 26101333 ~ 26103223 (-) True LOC122324579
XM_043219107.1 mRNA upstream 21023 26111476 ~ 26113724 (-) True LOC122324575
XM_043219109.1 mRNA upstream 32900 26123353 ~ 26125448 (-) True LOC122324578
XM_043219108.1 mRNA upstream 42107 26132560 ~ 26134793 (-) True LOC122324577
XM_043220558.1 mRNA upstream 49995 26140448 ~ 26144419 (-) True LOC122325522
TU210061 other downstream 33987 26050829 ~ 26054469 (-) True LOC122324466
XR_006247179.1 other downstream 34087 26052206 ~ 26054369 (-) False LOC122324466
XR_006247180.1 other downstream 34087 26052206 ~ 26054369 (-) False LOC122324466
XR_006247182.1 other downstream 34278 26052206 ~ 26054178 (-) False LOC122324466
XR_006247181.1 other downstream 34278 26052206 ~ 26054178 (-) False LOC122324466
TU210175 other upstream 95207 26185660 ~ 26187919 (-) True G142281
TU210168 other upstream 141571 26232024 ~ 26234245 (-) True G142278
unassigned_transcript_2516 other upstream 524190 26614643 ~ 26614730 (-) True trnas-gcu_32
TU210476 other upstream 832362 26922815 ~ 26924987 (-) True G142444
TU210568 other upstream 1139350 27229803 ~ 27256258 (-) False LOC122325335

Expression Profile