RNA id: XR_006247173.1


Basic Information

Item Value
RNA id XR_006247173.1
length 1259
RNA type transcript
GC content 0.49
exon number 5
gene id pgfa
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 26088415 ~ 26096971 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACACAGAGGGTGGGCTGATTTACTTTGAACAAACAACACTAATCCCACTGCCAACAGGGAGAAGTTCCTTTGGATTTCTTCTGACACCTGTACGTTATTTTAAGGAGCCGCTTGTATTATCGAAACGCCACCTAACTGAATGGAAGTTCAgcgttttaattaaaatgcggTGGGCTCTGGAGTGTATGTGTGCAGTGAATGGACGCTCTCGACATGAACAGATTCATCCGTGTGTCGCAGCTGGCTGTGATTCTGCTCTACATTGCTCTTGTTCAGgtttttacCATTCTGGGCAATCCCCACTCCAAAGtgaTGCTGTTCCCCGAGGCGTGGAGTCGTAGTCAGTGTCGTTCTCTGGAGAGGATGGTGGAGGTGGAGCAGGAGTATCCCGGAGGGGTGGAGCACATCTATAATCCCGGCTGTGTTCCGCTGCGACGCTGCTCCGGATGCTGCAACGACGACAAACTGACCTGTTTCCCCGCCAGCACACACAACATCAGCatacaggcacacacacacacacacacacacacacacacacagtgtaatTCTAGTGACTCGCAGCACTGTGTATTTAttggtgtttttcttcagctgcTGAGAATAACTCCGTCGGAGAGGAGCAGGGAGTACGTGCTGCTTTCGTTTCTGGAGCACCGGAGCTGTGAGTGCAGGCCCAGAAGACAGCACCCGAGACACCAGCAGTGAGTACTGATTGATTGACGGGTGGATGGCGGGGTGTTAGTAAACGCCAGAAGTAAGGTTGTGAGTGCTCTTCtcagcaggaggaggaggaagggcAAGCGCCGGAGGAGGCGGAGAGGAAGGACGCACAGGGATTGAGACGCAGCCCGGATCCGATGAACACTTTGGCAAATAGGCACAGACTCCATTCATCACACAAGCACTGGACCTTAGTGTGGTCAGTCTGACCCGGACCAGGACCAGGACCAGGACCAGGATCAGCTCAAGACCTGCTGCGGCTCCCAGATCAAACATCTGTTTATACCGACCGTAGCGGATCACACTGTCACTGAGAAACAATAAAGCTGCTAAAGCGAAGGAATCAGGCTTCATCAGGGAACAGACGAGAGAACAAATGTGAAATACCTCAGTGCTTTGAAAAAGAATCAAATCtactataaaaacatgaaatacaatGCAATGTGTGTTCATATCCCCATATGTgccttaatatattttataaaacaataaattcacagtatttaaagaaataaaagctgcttgttttgtgttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210064 lncRNA downstream 11342 26021487 ~ 26077073 (-) True G142247
TU210059 lncRNA downstream 32850 26018719 ~ 26055565 (-) True G142242
TU210062 lncRNA downstream 55217 26017371 ~ 26033198 (-) True G142245
TU210080 lncRNA downstream 76167 26010650 ~ 26012248 (-) True G142261
TU210079 lncRNA downstream 78027 26006269 ~ 26010388 (-) True G142260
TU210146 lncRNA upstream 52920 26149891 ~ 26159582 (-) False G142273
TU210125 lncRNA upstream 71563 26168534 ~ 26174879 (-) True G142273
TU210177 lncRNA upstream 93092 26190063 ~ 26191918 (-) True G142282
TU210174 lncRNA upstream 133335 26230306 ~ 26231483 (-) True G142280
TU210170 lncRNA upstream 135053 26232024 ~ 26232545 (-) False G142278
XM_043220270.1 mRNA downstream 445 26083089 ~ 26087970 (-) True cipcb
XM_043220296.1 mRNA downstream 8869 26072405 ~ 26079546 (-) False znf410
XM_043219110.1 mRNA upstream 4362 26101333 ~ 26103223 (-) True LOC122324579
XM_043219107.1 mRNA upstream 14505 26111476 ~ 26113724 (-) True LOC122324575
XM_043219109.1 mRNA upstream 26382 26123353 ~ 26125448 (-) True LOC122324578
XM_043219108.1 mRNA upstream 35589 26132560 ~ 26134793 (-) True LOC122324577
XM_043220558.1 mRNA upstream 43477 26140448 ~ 26144419 (-) True LOC122325522
TU210061 other downstream 33946 26050829 ~ 26054469 (-) True LOC122324466
XR_006247179.1 other downstream 34046 26052206 ~ 26054369 (-) False LOC122324466
XR_006247180.1 other downstream 34046 26052206 ~ 26054369 (-) False LOC122324466
XR_006247182.1 other downstream 34237 26052206 ~ 26054178 (-) False LOC122324466
XR_006247181.1 other downstream 34237 26052206 ~ 26054178 (-) False LOC122324466
TU210175 other upstream 88689 26185660 ~ 26187919 (-) True G142281
TU210168 other upstream 135053 26232024 ~ 26234245 (-) True G142278
unassigned_transcript_2516 other upstream 517672 26614643 ~ 26614730 (-) True trnas-gcu_32
TU210476 other upstream 825844 26922815 ~ 26924987 (-) True G142444
TU210568 other upstream 1132832 27229803 ~ 27256258 (-) False LOC122325335

Expression Profile