RNA id: TU210165



Basic Information


Item Value
RNA id TU210165
length 346
lncRNA type inter_gene
GC content 0.51
exon number 3
gene id G142278
representative False

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 26232024 ~ 26234245 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AGGACTGAAGGAACACAGAACACTGAgtctttatttcatgtttatttctctctctcggAGTTTCTTCTCAGTTCTTTAGGAGTTGGCGTTCGGGCCCTTCTTCTTGCCGAAGGTCGGGACCACGTTCACGAAGCGCCGGTTGTACTGGATCCGACGCTTGGCGCGGcccgtcttcttcttcttcttctcctgcttgTCCACCTACAGACACCAGGAGTCAGACCTCAGAGGAACCTCAGCAccgacaacacacacacacacacactcactaacacacacactcactaacacacacactcactaacacacacactcacacacacacacactcactaacacacacact

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU210170 lncRNA downstream 694 26232024 ~ 26232545 (-) False G142278
TU210174 lncRNA downstream 1756 26230306 ~ 26231483 (-) True G142280
TU210177 lncRNA downstream 41321 26190063 ~ 26191918 (-) True G142282
TU210125 lncRNA downstream 58360 26168534 ~ 26174879 (-) True G142273
TU210146 lncRNA downstream 73657 26149891 ~ 26159582 (-) False G142273
TU210193 lncRNA upstream 33667 26267912 ~ 26268125 (-) True G142297
TU210195 lncRNA upstream 35392 26269637 ~ 26270044 (-) True G142299
TU210330 lncRNA upstream 76966 26311211 ~ 26311698 (-) True G142346
TU210345 lncRNA upstream 85625 26319870 ~ 26320141 (-) True G142347
TU210349 lncRNA upstream 129774 26364019 ~ 26381273 (-) False G142349
XM_043220188.1 mRNA downstream 16776 26214663 ~ 26216463 (-) True arf6a
XM_043219656.1 mRNA downstream 22054 26197579 ~ 26211185 (-) True LOC122324910
XM_043220325.1 mRNA downstream 49149 26176901 ~ 26184090 (-) True actr10
XM_043220561.1 mRNA downstream 57169 26168534 ~ 26176070 (-) True LOC122325525
XM_043220560.1 mRNA downstream 70188 26159166 ~ 26163051 (-) True LOC122325524
XM_043219090.1 mRNA upstream 1174 26235419 ~ 26242824 (-) True fkbp3
XM_043219620.1 mRNA upstream 51568 26285813 ~ 26287605 (-) True LOC122324887
XM_043219621.1 mRNA upstream 53592 26287837 ~ 26288247 (-) True LOC122324888
XM_043219619.1 mRNA upstream 55524 26289769 ~ 26292156 (-) True LOC122324886
XM_043220562.1 mRNA upstream 65252 26299497 ~ 26301875 (-) True LOC122325526
TU210175 other downstream 45320 26185660 ~ 26187919 (-) True G142281
XR_006247174.1 other downstream 136268 26088415 ~ 26096971 (-) False pgfa
XR_006247173.1 other downstream 136268 26088415 ~ 26096971 (-) True pgfa
XR_006247182.1 other downstream 179061 26052206 ~ 26054178 (-) False LOC122324466
unassigned_transcript_2516 other upstream 380398 26614643 ~ 26614730 (-) True trnas-gcu_32
TU210476 other upstream 688570 26922815 ~ 26924987 (-) True G142444
TU210568 other upstream 995558 27229803 ~ 27256258 (-) False LOC122325335

Expression Profile


TU210165 Expression in all Baseline Samples

Bar chart with 10 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
End of interactive chart.

TU210165 Expression in each Bioproject

Bar chart with 2 bars.
TU210165 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 70.
End of interactive chart.