RNA id: XM_043218578.1


Basic Information

Item Value
RNA id XM_043218578.1
length 2609
RNA type mRNA
GC content 0.47
exon number 2
gene id gjb7
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 1021630 ~ 1025274 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATACACGTTCTCTCTTGGTAATATAACTAGCAAACAGGGCACTGTCTGCTTGTAATAAGACACATTCATTTGGTTCTTCTTTATTTACAGCAGCACCTCACACTTCAGATGATTGAGTTATACGTCACGCTCATCTCCAGATTTATTAGTCCCTCATTCAAACAAAACTGAAGGAAGAGATTTTATGAATAAAGCCTCAGCAGACTGGATTATTTCTGTATCTGTTTCAGCGTGTTGTCAGTGAAGCAGACGCTGTTTATTAGTCAAGTTCATACCTAAGCATTTTCATTCACCTCTGTgggtttttcttctcttctcgtCTTATATCGATGAACTCATAATAGTATTTGGAGAGCGAGCACATCTCAGGGTTTGTCATGAATACATCTGAACATAAACGAGTGATGAAAGTGCCTCCGTAGACAGGGCCTGATGACGTCTCTGAGGTGGAGCGTGAcgaaaaatgatgaaaacaagCGTGATTTTCTCTGATGATTCATTCACAATAGAGCCGGTGTCACCGGTTAAGAgtataaacatactttttgtcCTGATTTGAAGAGCTGCAGCAATCACAGACGGAGGCGTTTGAGGTAACACTATCAGCTCTGCCGAGCTCATCAGTAATTGATGCTCTCATTAAAACTGCACACTAACCTACTGGGTTACACACATCTACGGGTTTACTTTATGTGTGAGGAACCCGTCAGAGACAAACTAGACCCTGAATCCACCGAGCATCTACCTGCTGATGAGTACTAAAGTGTGTTGAACCGAGCGTTTGTGTGTGGAGTGCTAGCCGTTCATCCGGTGAGACCTTCTTCTGTTTACACTGCTAACACACCACGAGGATCAGCAAGCAGCCGCTTCAGAGCAGAGCGCTGCCAGAGTCATGGCAACCAAACAGGTGTGGCACCTCCGCCAGGTGTGTTTGACTATCAAATAGCAGAGAGACGCTGCTCCCGAGCGTTCAGTCGAGCAGACGGGAATCAGACCGCATGACAGgtcttatgggtttggagcGACAGGAGTGACATGAATGACAGGATCGTCCTCTTCGGGTGAACTGAACGAACTCCTCAGGAGCGATCTGAAGGCACTGAACTGTTTCGTCCTGACTCCGCAGCATGAACTGGGGCTTCCTGGAGACCGTGCTGAGCGGGGTGAACAAGTACTCCACCGTGGTGGGCCGCGTCTGGCTCTCCATCCTCTTCGTGTTTCGTATCCTGGTGTACGTGGCCGCTGCCGAGCAGGTGTGGAAGGACGAGTTCAAAGACTTTGTGTGCAACACGCAGCAGCCGGGCTGCGAGCAGGTCTGCTTCGACCGCTTCTTCCCCATCTCTCAGGTGCGGTTATGGGCCCTGCAGCTCATCATGGTGTCCACCCCGTCGCTGCTGGTGGCCCTGCACGTGGCGTACAGAGAGCACCGCGAGAGCAAGCACAAGCGGAGGCTGTACCAGGACAAGGGCAGCATCGACGGAGGACTGTTCTTCACCTACATCACCAGCCTGATCCTCAAGACGTCCTTCGAGGTGGGCACTCTGCTGGCTTTCTACTTCCTGTACAGCGGCTTTCACGTGCCCCGCCTCCTCCGCTGCCAGGAGAGCCCCTGTCCCAACACCGTGGACTGCTACATCGCAAAGGCCACCGAGAAGAAAGTCTTCCTTTATATCATGGGCTGCACGTCTATACTGTGCATCGCGCTGAACGTGGTGGAGATGATATACATCATATCGAAGCAGTGCTGGAAGTGCTTCAGTAAGAGGTACGCTCCCGTTCACGAAAGAGGGCCTCCGTCCACGCTCACCCTCGGCTCTCCGCCGCCACTGGCCATGTCCAAAGAGGAAGGGCTTCATTCTGCGCCGGCTGGACACGAAAGCCCAAAGCTCGCTGCCGCATGAGCGCCTCTGCTTTTTCATGCATGCTAGATGCGCTGACAGCAAGGAAGAACAAGAACAATTAGTATGAAGAGGGAAGGGGAAGAGAAAACACTTCTCGTATCTTTTGTTGCACTGTATTCGGACAGAAACTCTTGCTATTTAAATAGCATCTAGTCAAATGAGACGTCAGCATGCCCTCATACTCACAAACCATCAACAAAGACGACACAGTGCAGCCCAGATGACATTAAATACAGGTTCAATTGGAACCAGTTTGTCAACAACAGTATGCTATGTGTGGAGAACAGGAAACTTATGTtgaatatttagtatatttttagtcctgcaaagtttatggtcatattaatatatttatttttgtatgctaATTGTGGTACTGTCCAATTGTTAAACCATTTGGTTTAACAATTGtctttaactactatgtacttaatcttttgatacaatgcacttaaagtgtacatgcaaggttttatattgtacttgcatttaaaaaatacctttCTGTAGATAAATCTTTAGTTACACCGCTGACCTTCAGCCCACCATTAaacccacctcaatagcagctaAAGGCATCTGCAATATAAGGAACACTGTaaacttttctttatattaGACATTTGTACACAGTTAAAACACCTAATACAACTGTACTTATGATGACTATATCTATTACATGTCCACAATAAATAACCTTGTAAGAT

Function

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199804 lncRNA downstream 97121 924266 ~ 924509 (-) True G135234
TU199802 lncRNA downstream 99752 921445 ~ 921878 (-) True G135232
TU199780 lncRNA downstream 103384 917428 ~ 918246 (-) True G135218
TU199765 lncRNA downstream 157748 863647 ~ 863882 (-) True G135214
TU199753 lncRNA downstream 256396 764744 ~ 765234 (-) True G135202
TU199789 lncRNA upstream 198 1025472 ~ 1026881 (-) True G135222
TU199796 lncRNA upstream 42393 1067667 ~ 1069889 (-) True G135226
TU199862 lncRNA upstream 81503 1106777 ~ 1107104 (-) True G135277
TU199793 lncRNA upstream 102018 1127292 ~ 1130076 (-) True G135225
TU199887 lncRNA upstream 212686 1237960 ~ 1238160 (-) True G135297
XM_043219169.1 mRNA downstream 116539 867719 ~ 905091 (-) False med23
XM_043219168.1 mRNA downstream 116539 867719 ~ 905091 (-) True med23
XM_043218960.1 mRNA downstream 199225 767443 ~ 822405 (-) False epb41l2
XM_043219374.1 mRNA upstream 23576 1048850 ~ 1058048 (-) False LOC122324736
XM_043219373.1 mRNA upstream 23576 1048850 ~ 1058048 (-) False LOC122324736
XM_043219371.1 mRNA upstream 23576 1048850 ~ 1058048 (-) False LOC122324736
XM_043219370.1 mRNA upstream 23576 1048850 ~ 1058048 (-) True LOC122324736
XM_043219369.1 mRNA upstream 25997 1051271 ~ 1058048 (-) False LOC122324736
TU199811 other downstream 56235 939173 ~ 965395 (-) False G135237
TU199809 other downstream 81455 938165 ~ 940175 (-) True G135237
TU199808 other downstream 81455 939173 ~ 940175 (-) False G135237
XR_006247189.1 other downstream 199172 753567 ~ 822458 (-) False epb41l2
TU199861 other upstream 77431 1102705 ~ 1103113 (-) True G135276
TU199860 other upstream 78032 1103306 ~ 1105818 (-) True G135275
TU199865 other upstream 85151 1110425 ~ 1110861 (-) True G135279
unassigned_transcript_2213 other upstream 427824 1453098 ~ 1453168 (-) True trnag-ucc_6
XR_006247319.1 other upstream 428356 1453630 ~ 1453745 (-) True LOC122325578

Expression Profile