RNA id: XM_043218592.1


Basic Information

Item Value
RNA id XM_043218592.1
length 2524
RNA type mRNA
GC content 0.44
exon number 15
gene id lin9
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 22769919 ~ 22776432 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGTGGAGTGTTTGAACTGCCCTCTCcgtcccacaatgcactgcggCACTCGGCCTTTGAAAAACCGGCGCGGCTAATTCAAGATGGCGGAGCTCGAGCAGCTGTTAGACGAGAGCTCTTCAGCTAAAGCCCTTGTAAGTTTAAGAGAAGGAAGTTTGTCTAATACTCTAAACGAGAAGAACAATTTACCAAAATCTCAGACCACCAGGGGACGGAGCAGTTATGTTTCTGTGGAAACGCCAACAAGGAGCTCAAAGAGGAGTCGACTGTCATGTGAGGATGAGGAGCGGCCTCTTGCCTCCAGATCTCCCAGGAGAAGCCAGAGGGTCACCACTGTGCCTCAGAAACTTACAAATGTCACAACACCAGACAAAAGGGCTTCACAGAAAATTGGACTGAGACTAAGAAACTTGCTCAAACTTCCCAAAGCTCACAAATGGTGCATCTATGAATGGTTCTATTCAAATATTGACAGGCCATTATTTGAAGGAGATAATGACTTCTGCCTATGTCTGAAGGAGTCTTTTCCTAATCTAAAGACCAGAAAGTTGACCAGAGTTGAATGGGGAACGATCAGAAGACTTATGGGCAAACCTCGAAGATGTTCCTCAGCATTCTTCGCTGAAGAGCGAATGGCACTGAAACAGAAGAGGCAGAAGATGCGTCTCCTGCAGCAGAGGAAAATCACAGATATGTCTCTATGCAAAGACCTGCCAGATGAGATTCCTTTACCCTTGGTCATCGGCACTAAAGTTACAGCTCGTCTTAGGGGTGTCCATGATGGCCTGTTTACTGGTCAGATCGATGCCGTAGATACCAGTGCAGCAACATATCGCGTGACCTTTGACAGAAATGGGCTCGGCACACACACTGTTCCTGATTACGAAGTGCTTAGTAATGAACCTCATGAGACGATGCCCATATCTGCTTTTGCTCAGAAACAGCGGCCGCCTCGTTTCCAGAACTTTCTGACCCCACCCCGTGGGGCCTATCCTGGCTCGACTCAGTCCATCTTAATGGATAACGACCCTCTGTTCAGTCAGTCCCCCTGGAGAAGTAAATTGACAGGAACTGATGGAGAGACACTGGGTGGCTTTCCTGTCAAGTTTCTTGTGCAAGTGACACGCCTATCCAAAATCCTCATGATCAAAAAAGAACACATAAAGCATTTGAAGGAGATGAACACAGAAGCTGAGAAGCTGAAGTCCTATTCCATGCCGATTGGATTGGACTTGCAGAAGAGATATGCCACAACAGTACTGGACCTGGAGCAGCTTAATAAAGACCTCAACAAAGTCCTTCATGAAGTACAGCAGTTTTGCTATGAGCTGGCTCCAGATCAGGGCATGCAGCCTGCAGATCAGCCCAGTGAGTTGCGACGGCGCTGTGAAGAAGAGTCACAGGAAGTTGTGCGTCAGAGTAATGCATTGCCTGATGGAGAACAGCGCGTCCAGAGCTCCAGCCTCACTCAACTCGTCTCTCGTCTTACAGCACTCCTCCTGCAGATCAGGTGTTTGGCCGAAGGGGGAGACTtgaattcatttgaattcaaatCACTCACAGACTCTCTGAATGACATAAAGAGTTCAATAGATGACTCCAACCTGAGTTGTTTTCAGGATAATGTGGAGATCCATGTAGCACACATACAGAGTGGGCTGAGCCAGCTAGGTAACCTCCATGCTTTCTCTGCCAACAACACCAACAGAACGTGACTGAAGTAAACTTGCACACCTCCCAATCTCAAATACGGACAGCGACGCACCTCTTCAACTCATcactttgttcttttttgttcaTTCTGTTTGACGTTATGAAAGGTCAGAATGTGTGTTCAGTAACTGTACCTGCACAAGTAGTGTTAAAATTCCCTGCCCGAAGGCACACAAGAGTCAGAAGATGTTCAACTagctagcaaaaaaaaagtgcagcgTGAAATTCTTTGTAGATGTAATTGTTTGATGTCATTTAAGATTTTGCTCACACTCGATTTGATATTTAAGTTTCcccttatttttattattattggtggTTTCCAACTAAGGGGCATGCCGTACGGCACTCCTGATTGgtgcagtttgtttgtttgactgaAACcgttttgtataattttatttcctCCGTCTCCTTCTCGAAGTGTGTGACTTTGAGTGTCCCGAGAGATGAGGTACTGTTCTGTCTGTTTTAAACTGttctgtatgttttaaatatgtacattgtAGATAACTgtacagttcactcaaaatatatcaataaatcaatcatatATAGGGTAATGTGGACATTTTTTGACTTGCCAGATTTGGGTATTTTTGCAACGCAGCCAATCGGTTTATACAAGTCCTATAATAGACAGCTGTGTGGAATGAAACAGTTTGTCTTGTCCTTGGAAGAAGAAATGATCACCCGAATGCCCCACTGGTGTATGTTTCAAATGCGTTAGTTTTCTGTGGGGTTGTTTTTTAACCTATAAGTGTATGCATGACACAAACGtttgtaaataaattgatttcTATTATCTTCA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0017053 transcription repressor complex cellular_component

KEGG:

id description
K21773 LIN9; protein lin-9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208522 lncRNA downstream 28992 22739641 ~ 22740927 (-) True G141283
TU208473 lncRNA downstream 107678 22660615 ~ 22662241 (-) True G141255
TU208238 lncRNA downstream 228225 22541463 ~ 22541694 (-) True G141083
TU208237 lncRNA downstream 228769 22540688 ~ 22541150 (-) True G141082
TU208235 lncRNA downstream 229592 22539920 ~ 22540327 (-) True G141080
TU208585 lncRNA upstream 54482 22830914 ~ 22831421 (-) True G141307
TU208599 lncRNA upstream 102300 22878732 ~ 22890133 (-) True G141319
TU208601 lncRNA upstream 107630 22884062 ~ 22890133 (-) False G141319
TU208609 lncRNA upstream 112088 22888520 ~ 22894015 (-) True G141324
TU208617 lncRNA upstream 132825 22909257 ~ 22915952 (-) True G141331
XM_043219919.1 mRNA downstream 86273 22670042 ~ 22683646 (-) True clic5b
XM_043220550.1 mRNA downstream 202788 22557504 ~ 22567131 (-) True opn8a
XM_043219692.1 mRNA downstream 217645 22541777 ~ 22552274 (-) True opn8b
XM_043219741.1 mRNA downstream 264117 22498745 ~ 22505802 (-) False LOC122324950
XM_043219740.1 mRNA downstream 264117 22498745 ~ 22505802 (-) True LOC122324950
XM_043220475.1 mRNA upstream 689 22777121 ~ 22791942 (-) True parp1
XM_043219706.1 mRNA upstream 16805 22793237 ~ 22802967 (-) True si:dkey-206f10.1
XM_043219255.1 mRNA upstream 64464 22840896 ~ 22845553 (-) True pomcb
XM_043219252.1 mRNA upstream 83044 22859476 ~ 22877145 (-) False snx9b
XM_043219248.1 mRNA upstream 83044 22859476 ~ 22877145 (-) True snx9b
unassigned_transcript_2512 other downstream 654130 22115707 ~ 22115789 (-) True trnal-uaa_37
unassigned_transcript_2511 other downstream 654799 22115038 ~ 22115120 (-) True trnal-uaa_36
TU208103 other downstream 656875 22112602 ~ 22113044 (-) True G140972
TU207994 other downstream 923002 21845806 ~ 21846917 (-) False LOC122325102
TU207987 other downstream 928451 21841113 ~ 21841468 (-) True G140883
XR_006247154.1 other upstream 612737 23389169 ~ 23401391 (-) False mcm9
XR_006247155.1 other upstream 614033 23390465 ~ 23401391 (-) False mcm9
XR_006247156.1 other upstream 614035 23390467 ~ 23401391 (-) False mcm9
XR_006247216.1 other upstream 1015645 23792077 ~ 23823050 (-) False tbc1d32
TU208856 other upstream 1228255 24004687 ~ 24006665 (-) True G141502

Expression Profile