RNA id: XM_043218596.1


Basic Information

Item Value
RNA id XM_043218596.1
length 2465
RNA type mRNA
GC content 0.45
exon number 12
gene id sccpdhb
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 18116114 ~ 18123136 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATGCAACTATTGTGGTAATATTACCTTTCCAGCACGAGGTGTCTCTCTACTTCAGTGTTTGACAGTCTCAGGAATCTTCGCTCACAAACTGTCTGGTTTATGGTTAAGCTACACTTATCAGAGACACAATCTGATCCACTAAACGTCTATATTTTGCACCGTACAGCGACAGCAGGAGAGCAACAGCGGTCGCCCTGACCTCGCCTGTGCGTTTGCTTCAAACACGGATCACGCGCACAATGGCGACGCTCACGACGTCAAGCAAAAGACCGTACCACATCGTAGTGTTCGGAGCGACCGGTTTTACCGGCCAGTTTGTAGTGGAGGAGGTGGCGCGGACGTGTAACGAGGGTCCGGGAAAGACGTTACAATGGGCTGTAGCCGGACGAAACCGCGACCGACTGGAAAAAACACTCATTCAGGCAGCTGACGCTCTGCGTAAACCAGAGCTGAAGTGTGTGGAGGTTATTGTAGCAGATGTAGACGAACCGGAGTCGTTGGCCATCATGTGCAAACAAGGAATCATTGTGCTCAACTGCGTGGGACCATACAGATTCTATGGAGAGCCCGTGGTAAAGGCCTGCATAGAGAATGGAGCCCACTGCATTGATATCTGTGGAGAACCACAGtttttagagGGCATACAGTTGAACTACCATAGCAAAGCTCAGGAGAATGGTGTATATATCATTGGAAGCTGTGGGTTCGATTCAATACCAGCAGATATGGGCATCCTTTTTACACGGGATCACTTCAAAGGAACGCTCACTGCTGTGGAGAGCTTCCTAACAATCAACACGGGACCTGAGGGAGGACGTGGCCATGATGCAACGTGGCAGTCAGCCATCTTTGGCTTCGCTGACAGTGCCAGTCTCAGAAGAATAAGGAAGAAGTTTGGGCATAAACCTCTGCCAGCCGTTGGCGCTAGAATCAAAAAGAGGGGAGCTCTGTTCTTCAGTAAGGAGATTGAGCAGTATGCCATTCCCTTCATGGGCTCAGATCCGTCTGTGGTGCGACGGACTCAGCGCTATATGCACGAGGAACATAAACACAGCCCTGTTCAGTATATGGCATATGTAGGTATCGGTGGTCTTTTCTCCGTGCTGAAGACCCTCTTTGCAGGCGTTGTCTTCTGGTTCATGGTCAAATTTAGTCTTGGCAGGGGATTGCTTACTCAGtttcCAGAATTCTTCTCATTTGGTTTGTTCTCCAAGACCGGACCAACAAGAAAGCAGATGGATGGAACCTCTTTCTGCCTGAGGTTCATGGGGGAGGGCTACACGACCGGTCAGGACCTTTCTCGGGGCAAGCCAGATGCCACAATCAGCACTGAAATAACAGGACCGGagccaggatacattgcAACACCGATTACCATGGTGCAGGCAGCTATTACGCTGCTTAACGAACCTCAGTGTCTCCCTAACAACGGTGGTGTGTACACTCCAGGAACAGCTTTTGCAAGAACTACCCTAGTGGACCGTCTGAACAAACACGGAATCCAGTTCTCACTGAAGAACGGACAACAGACATGAGTGCTCATCATCAGCCTGGTTGAGCtcttttgttatataaatgaaaaaaaatatcgcATTGAGTTGTGTAGCCAAAAGTGTGAGAGCATCCTTCTGAAAAAATTTAGGCAAAAGTTTTTTTCCTTAAACTTTAAGGAAACGGATGTGAAATACTAtgatttatagcatttattaatttatcttaTGAAAAATAGATTATCAATAAATCCAACACAATGTAGatcatacaaacacatacatgaaGGGGTGAGCCCATACAGTTTTCTCAGTgtggcaaacacacacacacaggccagtCCCCACAATGTCAGGttttgtcacggtgtggtttagcgtGAAGGAGCATTCGACGAGAATAAATTAACTTGAATAGTTCTAATCCTCTTTAAAcggacaaaaaaataatatacaggtaggcagacaggcagaacaaaaaccacacgtatTAACCTCGACGAtcaaacaaactgaatacaaacacacaggacttaaatacacaaggaaatcactaaattaacgagacacaggtgaagacacTGACCCAATTAACAGGAACAAAGGTAGggaacacagagcacatggcacaagatcaaaacaacaacaaaggatccaaagacgtgacaggtTTCAAGTAAATTTAACTCTAACCTTTGCAGTGTCTTAAACAAATATAGATGAGTGTGTTAGTGTAAACACTGCATGTATGGGTGTATCTTCAAATAGGGCAACCAGGGGTTaactaaatgttattaaaactaCAATTTAAACAACACAAATTTTCATGTCAGGTTTTCATGTCAAATTCTGGTTTTACTATCCTTGTAaatgtacgcacacacacacacacacacacacacacacttcaaaatcAGATCAAAGTCCTACTGCAAGATTTGGTGATgctgcaaataaaacatttttgaaacatg

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206185 lncRNA downstream 8711 18087212 ~ 18107403 (-) True G139591
XR_006247178.1 lncRNA downstream 208499 17893736 ~ 17907615 (-) True LOC122324448
TU206190 lncRNA downstream 217492 17894002 ~ 17898622 (-) False LOC122324448
TU206130 lncRNA downstream 313918 17801402 ~ 17802196 (-) False swt1
TU206137 lncRNA downstream 316248 17795484 ~ 17799866 (-) False G139567
TU206266 lncRNA upstream 33665 18156801 ~ 18157647 (-) True G139651
TU206271 lncRNA upstream 42990 18166126 ~ 18166731 (-) True G139653
TU206313 lncRNA upstream 132722 18255858 ~ 18290820 (-) False G139681
TU206311 lncRNA upstream 188220 18311356 ~ 18313605 (-) False G139681
TU206315 lncRNA upstream 188220 18311356 ~ 18313605 (-) True G139681
XM_043219852.1 mRNA downstream 79748 18030682 ~ 18036366 (-) True stmn4
XM_043219850.1 mRNA downstream 94538 18018219 ~ 18021576 (-) True paqr8
XM_043219851.1 mRNA downstream 98754 18014452 ~ 18017360 (-) True LOC122325023
XM_043220604.1 mRNA downstream 102663 18007946 ~ 18013451 (-) False znf395b
XM_043220333.1 mRNA upstream 495 18123631 ~ 18133228 (-) True cnstb
XM_043220335.1 mRNA upstream 495 18123631 ~ 18133025 (-) False cnstb
XM_043220334.1 mRNA upstream 495 18123631 ~ 18131951 (-) False cnstb
XM_043220328.1 mRNA upstream 11052 18134188 ~ 18151673 (-) True kif26bb
XM_043220435.1 mRNA upstream 38124 18161260 ~ 18163325 (-) True lft1
XR_006247229.1 other downstream 291913 17810274 ~ 17824201 (-) False swt1
TU205714 other downstream 688043 17346806 ~ 17428071 (-) True erh
TU205713 other downstream 688043 17425868 ~ 17428071 (-) False erh
TU205287 other downstream 1653898 16455468 ~ 16462216 (-) True G139030
TU205233 other downstream 1749342 16364810 ~ 16366772 (-) False fndc1
XR_006247304.1 other upstream 220336 18343472 ~ 18350122 (-) True adgrf3b
TU206351 other upstream 282891 18406027 ~ 18446949 (-) False G139706
TU206365 other upstream 283618 18406754 ~ 18442292 (-) True G139706
unassigned_transcript_2507 other upstream 952910 19076046 ~ 19076118 (-) True trnaf-gaa_119
TU206720 other upstream 1131674 19254810 ~ 19256255 (-) False batf3

Expression Profile