RNA id: XM_043218599.1


Basic Information

Item Value
RNA id XM_043218599.1
length 1784
RNA type mRNA
GC content 0.48
exon number 15
gene id riox1
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 20674997 ~ 20680821 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCTTGACTTCAGTAGAAGAAAAGCGCTCATGCGTCTCATGTCTGCTCTTCAACATCTGAGCCatggaaagaaaacacatgTCCGCATTATCTATTTATCAGTCGTTATCAGGAGGGACGAAACCACAAGTTCAGGCTAAATCCCCGCCAGCGAAGAAAATCAAAAGAAAGGAGAATGGCATCCAACCAAACAAGAAatctaataaaaagaaaagaatgagaCCTCTGAAGGCCAGCTTAAGGCTCAGCAGCGGTGAAAAGGAGAAATCTAAGGCTgaGAAGGAATGCGAGACACATAATGGTGAAGGATTTAAGAGTCCAGCTCTTGATGTGCTCCTGATCGATCTGGCGAAGGTCAGCAACAGCAGTGAGAGAGCCAACAGAATGTTCCAGTGGCTTATTCACCCAGTCCAAGAAAAGAGCTTCTTCAGAGATAATTGGGAAAAGAAACCGATCCTCATCCAACGACAAAATTCAGACTATTACAAAGGGCTCTTTTCGACAGCTGCGTTTGACCACATCTTAAGAAATGATGACGTGCAGTACGGAGTGAATCTGGATGTGACGAGCTACACAAATGgaaaaagagagacacacaATCCTCCAGGAAGAGCGTTGCCGTACACTGTGTGGGATTTTTATGAGAGTGGCTGTTCTCTCAGGATGCTCAATCCTCAAGCATTTTCCTCCAGTGTGTGGCAAGTGCTCTCTATTCTTCAGGAGAAGTTTGGCAGTATGGCGGGCGCAAACGTttaccTGACACCGGCGGGGACCCAGGGTTTTGCTCCTCACTATGATGATATAGAGGCGTTCATTTTGCAGTTGGAGGGCAAGAAGCACTGGAGAGTGTACAACCCTCGATCCAAAGATGAAGTGTTGCCACTAGTGTCCAGTCCTAATTTCAGTCAGAATGAGATCGGGCAGCCCATCATGGACGTGGTGCTGGAACCCGGCGATCTGCTGTATTTTCCTCGTGGCTTCATTCATCAGGGCAACTGTCTGCCTGACGCTCACTCGCTGCACATCACCGTCTCCTCCTTCCAGAGGAACAGCTGGGGAGATCTGCTCCTCAAATTGATGCCAGCAGCTCTGGAGATCGCGATGGAGGAAGACGTCGAGTTCAGGAAGGGACTGCCACTCGATTACCTTCAGTTCATGGGAGTTCAGAACTCTGAGAAGGAAGACCCACGAAGAGACCGATTCATCGCACACGTCGAGGGCCTGATGAAGAAACTGGCGAGTTTTGCGCCAGTTGATGCTGCCGTGGATCAGAAAGCCAGAGACTTCCTGCACGACTGCCTTCCTCTGGTGCTGAGCACAGagGAGAAGGCCAGAAGTGTGTACGGGGCTCCTGCTCGATGGGGACACGGGGAGGCCCTTGATGTGACCGTTCAACTGAAGAGCCAAACTCAAATCAGACTCATGCGAGCTGGAGCTGCAAGGTTGTGTGGCGATGGAGAAACGGTCTCTCTTTTTTACACTACTGAGAACTCTAGAGTCTATCATAAAGAAGAGCTCAAGAGCATTGTGATGAAAGCAGAGcacATTGATGCCATGGAGTTTCTGATTCATTCATATCCCAAGTTTGTTTCTGTGGCCAGTTTACCATGCGAGACATTGGAGGCTAAGATGTCTCTGGCTGAGCTGCTCTTTGAGAAAGGACTGATCTGCACATCCGAACCTTTGACAGctgaataaaaactgtattttgcgAATCAAAAAAAATTAGCTTCCTGTATCATATGCTAATTTCCTGttctaatacatattttaaagaaagcaaa

Function

GO:

id name namespace
GO:0034720 histone H3-K4 demethylation biological_process
GO:0070544 histone H3-K36 demethylation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0045668 negative regulation of osteoblast differentiation biological_process
GO:0005654 nucleoplasm cellular_component
GO:0005730 nucleolus cellular_component
GO:0005506 iron ion binding molecular_function
GO:0032453 histone demethylase activity (H3-K4 specific) molecular_function
GO:0051864 histone demethylase activity (H3-K36 specific) molecular_function

KEGG:

id description
K16914 RIOX1, NO66; bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207360 lncRNA downstream 16640 20634310 ~ 20658357 (-) False pkib
TU207356 lncRNA downstream 48134 20626655 ~ 20626863 (-) True G140413
TU207301 lncRNA downstream 263136 20410629 ~ 20411861 (-) False nkain2
TU207243 lncRNA downstream 388002 20286480 ~ 20286995 (-) True G140328
TU207227 lncRNA downstream 406731 20266668 ~ 20268266 (-) False G140315
TU207404 lncRNA upstream 55767 20736588 ~ 20791701 (-) True G140449
TU207403 lncRNA upstream 109085 20789906 ~ 20791701 (-) False G140449
XR_006247242.1 lncRNA upstream 311700 20992521 ~ 20995513 (-) True LOC122324961
TU207496 lncRNA upstream 315545 20996366 ~ 20996681 (-) True G140522
XR_006247273.1 lncRNA upstream 365004 21045825 ~ 21049976 (-) True LOC122325251
XM_043220479.1 mRNA downstream 1877 20661011 ~ 20673120 (-) True cpsf2
XM_043218760.1 mRNA downstream 16617 20634296 ~ 20658380 (-) True pkib
XM_043220375.1 mRNA downstream 41215 20632717 ~ 20633782 (-) True fabp7b
XM_043220374.1 mRNA downstream 42490 20626973 ~ 20632507 (-) True smpdl3a
XM_043220366.1 mRNA downstream 58782 20596263 ~ 20616215 (-) True clvs2
XM_043218860.1 mRNA upstream 26104 20706925 ~ 20718097 (-) True ints9
XM_043218859.1 mRNA upstream 26104 20706925 ~ 20717973 (-) False ints9
XM_043218861.1 mRNA upstream 64381 20745202 ~ 20757734 (-) True hmbox1b
XM_043218863.1 mRNA upstream 64381 20745202 ~ 20757733 (-) False hmbox1b
XM_043218862.1 mRNA upstream 64381 20745202 ~ 20757733 (-) False hmbox1b
TU207179 other downstream 612020 20061602 ~ 20062977 (-) True G140277
TU207099 other downstream 615394 20057624 ~ 20059603 (-) True G140227
TU207100 other downstream 616498 20057624 ~ 20058499 (-) False G140227
XR_006247245.1 other downstream 1059795 19601532 ~ 19615202 (-) False trim54
TU206747 other downstream 1371029 19300376 ~ 19303968 (-) False angel2
TU207486 other upstream 292583 20973404 ~ 20975750 (-) False crnkl1
TU207613 other upstream 517889 21198710 ~ 21278741 (-) True G140616
TU207887 other upstream 828808 21509629 ~ 21512353 (-) False LOC122324936
TU207950 other upstream 1051725 21732546 ~ 21741004 (-) False batf
TU207987 other upstream 1160292 21841113 ~ 21841468 (-) True G140883

Expression Profile