RNA id: XM_043218604.1


Basic Information

Item Value
RNA id XM_043218604.1
length 5333
RNA type mRNA
GC content 0.41
exon number 30
gene id LOC122324295
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 18431833 ~ 18447372 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCCTCTTTAAACTTACTCTCACTTGTTGCAACGTCTTTCAAAATACGCTTTCATCACTGAAAAAATGCATGGAAACTATTTAAGGAAAAAACTGTAAGGGGAACTTTCTGTAGGTGGATCATTTCACAAGGAAACAAAAAGCCAGATCTTCAGACAGATAGCATTGTTGTTCACGCTATCGTGCCAGACACAGGGACACTTATGTTTTACAGAAATCCTGGATATCCTTATGAAATTCCAAATGTTGAGGAAATTATGTGATTGCAATTTACTTTGAGTATGAAACATGGCTATTGAAGTAAGAATCGTCATGGCTATCCTGCTGTCTCATGTGTGCCTTGTGGAAACTTTCGATTTTTTAGGAAAAAGCCTGGATTTACAGTTTAGCTACACAGATGGAGCAGTGCATCATATTGGACGAAGGAGTGCAGaTCCAGTGGTATACATCATGGTCGTTGAAGTGAATGCATCTGAAACTATTGCAATCAGCGAAATCAGATCTTTAGTGAATTCTGTCGTACTTCCATTTCAAGTGGACAGTGATGTTGAAATTACAGCTTTCAACCTTTCGACAGTGTGTTCCCTGAATGAAACCCAGTATCAGTGTAAATGTGAGGGTCTGTTTGTTTGGCCGAATGACACGTGTTACTTATACGAGGCCTGTGATGTCATCACTGATGGTTCATGTACATGTATCAATGCCCTTCCAACCGACGGACAGTTCTGCCAAGAGCAACTTTCTCAGTTTACGTATGAGTACGAGACTGAAATCGATGCCAGTTTGTCTGACTTGTTCCTGGTGGACTACTTACGGAATCTCGTCACAAATACCAGTCTGCCTTTCCCTCTGAACAACAATATAAACATCACAGACATCGACATGACTACTGTGTGTGGGTTAAATGGAACAGAATATGAGTGCCAGTGTGAGCAGGATCATGTCTGGCCCAGTGACACCTGCAGAGCCTAtcaggtgtgtgatggcattgTGGGAGGCACTTGTGGATGTATTCAAGCTCTCCCTTCAGAGGGTCCACTTTGCCTGAAAGatatcAATGAATGTAAAGATGCAGTGTCAGTGTGTGGTCCATACTCAGATTGTATTAACTTCATTGGGAGTCACATGTGTTCATGCTGGAGTGGATTTAATACCTCCAATAAAGACAGTCCTGTGAGCCGTAACAACTCATGTCAGGatataaatgaatgtCTGTTCAGTTCACCTGTATGTGGTCCAAATTCCATCTGCACAAATCAGCTGGGAAGTTATAATTGTTCATGTCTGGATGGGTTCACTGCAACAAACTCACTTCTCCTCATCAGCAACAATAACACATGTAGAGATGTGAATGAATGTCTTCAGACGACGGAGGTCTGTGGTCCAAACTCTCGTTGCACAAACTTAATTGGGAGTTACAGCTGTTCCTGCTTGACTGGATATACAGTAACAAATAGCAGTGAACTAGTCAGGGCCAGGAACCCATGCAATGatataaATGAATGTCTGTTCAGTTCACCTGTATGTGGTCCAAATGCCAACTGCACAAATGAAAAGGGAAGTTATAATTGTTCATGTCTGGATGGATTCACTGCAACAAACTTGCTTCTCCTCATCAGCAACAATAACACATGTAGAGATATAAATGAATGTCTGTTCAGTTCACCTGTATGTGGCCCAAATGCCAACTGCACAAATGTAATGGGAAGTTATAATTGTTCATGTCTGGATGGATTCACTGCAACAAACTCAAGTCTCTCCATCAGCATTATCAACACATGTGCAGATGTGAATGAATGTCTTCAGACGACGGAGGTCTGTGGTCCAAACTCTCGTTGCACAAACTTAATTGGGAGTTACAGCTGTTCCTGCTTGACTGGATATACAGTAACAAATAGCAGTGAACTAGTCAGGGCCAGGAACCCATGCAATGATGTAGATGAATGTCTGTTCAGTTCATCTGTATGTGGCCCAAATGCAAACTGCAAAAATCAGCTGGGAAGTTATAATTGTTCATGTCTGGATGGGTTCAGCGTAACAGACTCAAGTCTCCTCATCAGCAACAATAACACATGTAGAGATATGAATGAATGTCAGTTCAGTCCATCTGTATGTGGCCCAAATGCCTACTGCACAAATGAAATAGGAAGTTATAATTGTTCATGTCTGGATGGATTCACTGCATCACACCCGAGTCTTCCCATCAGCAACAATAACACATGTACAGGTTCTTTAATTTCAACAGTACCAccaccatcaccatcatcatcatcatcatcatcatcaaaaccaacaacaacTTCAGCACCAACAgTAATTGGAATGTCATTGacaataaatcagatttttgaCATCGGTCTTACCGACCCTACTAGCAAGACTTACAAAGATTTATCTGGAAAAATTGAATCAACAattaatGCATGTTATTCTGATAAACTAATTGGCTACATAATTGGTTCTGCAAGCATCTTGAGATTCAGGCCTGGTAGTGTTATAGCAGACTACACAATAAGTGCAACATCCAGCAGCCTTGACTTTGGAGCAGCCAACGCACAGGTTTCCGAGTCTTTAAGGGCGCAAGGAATAATTGTAGCTGAAAATTATGCTTTTGCTCAAAGCGaTCAAACATACTTCACGAAAGATGAGTTATATCCTCTGCAAAAGGTGGACCTGAACTGTAAACGGACAGACTCGGCAAAGAGACCGATAGCATGGACACTGGACAACAATGACCTTACTGGaaacactaaatatttactttCAAATGACAACAGTACTCTCACTATGAAAAACGCTAGTGAAAGTGACAGTGGTCGATATTCATGCATTATACAGAGAAATACAATACCCTACATTCAGTggcaaaaaatcattattaaacaACGGCCCAGTATTATTGTAGGTGATAGAATTCGTACTTTTTCATGTAGTGCCAGCAGTTTCCAACTGAAATGTTCTGTTGATGCTGGCTACAACATTGAGTGGCTCGTGGGAACAGAAGAACACATTTCAGGATTTGACAGTATCACATTAAACTACGCTCCTCAGAAGGGGAATTGTACAGAAGAAACCTTTACTTGTCGTCTCAAGGATCTGCCACAACTACAGTATTTCAGTTACAGCTATAGCAGCGTCACAGTTAAGAGAATCAAAGGAGCTTATGATTGTCAAAACGAAGAACTTGGAGTTGGAAATACTAATGATGTGAGGACAGGGGTCTGTGGAACAGGCATGAAAGGCACCATAACTTACAAATGTCAATCACGTGATTGGAAACCTGAAGACGACAACTGTGTACTTGAAGTTATCGACAACCTAAAAAACAAACTCGAGtccTTGACTGTGGAAGGGATTCCAGGGTTTATGGCTAATCTCAGTTTTGCCACATCggaaaataatattattataaccCAGTCTCCTGCTACTATCAAAGTAATTGTTGAGATACTCTTTAAAATTGCTGACTTGTCACAAACTGCTGTCATTACTCAAACAGTGATGGGGAACTTTCTAAAAACAGTGGACATTATTGTATCTGGTAATGTCAGAGATACTTGGAGCAAATTAAACAACGGGAACAACACAGAAGACACCAGCATTAAACTTCTGAGTGCTATTGAGAATATAAGTGACCACCTCACAGATGAGTTTGACATTTTGGAAAAATCCATTCAGCTGAATAGAACTACAATTACAAactcattcattttaacatcaGCACTGCCAAACTCAACTACAGAGATTGTGATACCACAGGTTCCTCAAGCGACTATCATAACCATCATAATCTTCACAAGTCTTGACAATGTTTTGCCTTCTGAAGGTACTAATGACAGCAAGAAATCAGATGTGCGCATCAATGGAGATGTGGTTGTTGTTAAGGTTAACGAAACGCTTAACaacatttcttttacatttgacATTACTGATCAGTCTTTGAGAAAGCCTCAGTGTGTCTTTTGGAACTTTAGTCTCAACACATGGGATTCCACTGGATGTGAAGTAAAGCAGAACAGCACTGGAAACATTACATGTGAATGCAACCACACAACTTCATTTTCTATCCTAATGTCACCGTTTTCCCTCGATCATATAGCCTTAGCATATATAACTTACATTGGCGTAGCTATTTCGATGGCCAGCTTGATTATATGTCTGATTATTGAGGCTACCGTATGGAAGTCAGTAAGAAGAAATGACACATCCTACATGCGACATGTCTCCATAGTCAACATTGCTGTGTCTCTGCTGATCGCAAATATCTGTTTTATCATTGGAGCTGCAGTCACGGATAAAGAGCAGCCGACCAAAGAGGCTCACTGCAGTGCACCAGTTTTcttcatgcactttttttacCTGGCTGTTTTCTTCTGGATGTTACTGTCAGCACTGTTGCTCTTTTACCGTACAGTCATGGTCTTGTCTCAAATGTCAAGAGCTAAGATGATGGTCATTGCCTTCACAGTCGGTTATGGTGCATCTTTGCTCATAGCGGTCATTACTGTTGCATCAACAGCTGGACAACAAAAGTATACTTCCAAACAAGCATGCTGGCTGAACTGGAACGAATCAAATGCTCTGCTGGCATTTGTGATTCCAGCTCTCACTATTGTAGCCATAAACCTTGTGGTTTTGGTTGTGGTTCTGTACAAGATGTTGAGAAGAGGAGTTGGTGCCACAACTCAACCAGATGAGAGGCATGCCCTGGTGGTTATTGCCAGATGTGTGGCCATTTTGACTCCTATCTTTGGTCTAACATGGGGATTTGGAATTGGAACCATGGTGTCACAGGAATTAGGCATTCATGTGGTGTTTGCACTCCTCAACTCACTGCAGGGATTCTTTATTTTGGTGTTTGGAACACTTTTAGACAGAAAGGTTTGTGAGTCACTACCAGGAAAACGGTTGCTACAGAAACTTTCAAGCCAAACCAAGAGCACCAGCACGAGAACATCATCCGCATCTGAAATGGCTTTCTTGCAAAGGAGGCGACAGAGGCAGGTGTACCATGTATCCGAAGCCAACCATTCCTCGGCATCTTCAGACAGCTTCAGTGGCTCATACActgttttgaacacttaaaagtgtttctgttttgaatgattagtttaaaaataatattacaatatgcCTTTGTAATGTATTATGTAACGTTCTGTGAATGCAGTGATGgagttttatcttttttaaacaaattatagagtagttcctttttttattagatattataatccagttttttgctcttttatgATGAATTCCAAATATTACCAACATTTCTGAATGTTACTGCAGCATcgtctttaaataaatgcatctgcGGGAATGATA

Function

GO: NA

KEGG:

id description
K08458 ADGRF5, GPR116; adhesion G-protein coupled receptor F5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206385 lncRNA downstream 19979 18405804 ~ 18411854 (-) True G139708
TU206343 lncRNA downstream 89503 18342047 ~ 18342330 (-) True G139704
TU206341 lncRNA downstream 90650 18340729 ~ 18341183 (-) True G139702
TU206340 lncRNA downstream 91589 18340029 ~ 18340244 (-) True G139701
TU206339 lncRNA downstream 92323 18339274 ~ 18339510 (-) True G139700
XR_006247142.1 lncRNA upstream 2580 18449944 ~ 18452122 (-) False LOC122324299
XR_006247141.1 lncRNA upstream 2581 18449945 ~ 18452116 (-) True LOC122324299
TU206392 lncRNA upstream 2598 18449962 ~ 18452132 (-) False LOC122324299
TU206496 lncRNA upstream 151330 18598694 ~ 18598912 (-) True G139790
TU206504 lncRNA upstream 179943 18627307 ~ 18634666 (-) True G139798
XM_043218609.1 mRNA downstream 153 18419791 ~ 18431680 (-) True LOC122324298
XM_043220537.1 mRNA downstream 15057 18409158 ~ 18416776 (-) True LOC122325499
XM_043220536.1 mRNA downstream 22724 18405803 ~ 18409109 (-) True LOC122325498
XM_043220535.1 mRNA downstream 26014 18401166 ~ 18405819 (-) True LOC122325497
XM_043218603.1 mRNA downstream 30643 18366767 ~ 18401190 (-) True adgrf6
XM_043219440.1 mRNA upstream 6344 18453708 ~ 18473259 (-) True tnfrsf21
XM_043220441.1 mRNA upstream 81074 18528438 ~ 18555294 (-) True ptchd4
XM_043220348.1 mRNA upstream 157287 18604651 ~ 18607543 (-) True LOC122325333
XM_043220151.1 mRNA upstream 214145 18661509 ~ 18669079 (-) True si:dkey-1j5.4
XM_043220539.1 mRNA upstream 223588 18670952 ~ 18679703 (-) True lbr
XR_006247304.1 other downstream 81711 18343472 ~ 18350122 (-) True adgrf3b
XR_006247229.1 other downstream 607632 17810274 ~ 17824201 (-) False swt1
TU205714 other downstream 1003762 17346806 ~ 17428071 (-) True erh
TU205713 other downstream 1003762 17425868 ~ 17428071 (-) False erh
TU205287 other downstream 1969617 16455468 ~ 16462216 (-) True G139030
unassigned_transcript_2507 other upstream 628682 19076046 ~ 19076118 (-) True trnaf-gaa_119
TU206720 other upstream 807446 19254810 ~ 19256255 (-) False batf3
TU206721 other upstream 814102 19261466 ~ 19262878 (-) True LOC122324949
TU206746 other upstream 853012 19300376 ~ 19302848 (-) False angel2
TU206747 other upstream 853012 19300376 ~ 19303968 (-) False angel2

Expression Profile