RNA id: XM_043218621.1


Basic Information

Item Value
RNA id XM_043218621.1
length 1986
RNA type mRNA
GC content 0.45
exon number 9
gene id acat2
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 16310886 ~ 16314723 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTAGTCTTATCAAATGAATGAGACAACGTGAAGTAGGAGGCTCCTCGAAACAACCTGTATATATAGAAAGAGCCGACCTACCGGACACATAACAAGGAACCTGCCACCATTACAGCCAAGATGAACACGGATGCGATTGTTATCGTTTCTGCCGCGAGGACTCCTATAGGATCCTTCAATGGAGCCCTTAGTAGTGTACCTCTCAATGATTTGGGGACATTAGTCATTAAAGATGTGCTTAAGAGAGCCAATGTAAAGCCAGAAGAAGTCTCAGAAGTCATCATGGGTCATGTCCTCACTGCAGGGCATGGGCAGAACCCTGCCCGGCAGGCAAGTGTTGCTGCTGGTATCCCATACTCAGTACCAGCCTGGAGCTGTCAGATGATCTGTGGATCTGGCCTGAAGGCTGTGTGTCTTGGTGCTCAGTCCATCATGACTAAAGAATCCACTATAGTCATAGCAGGAGGCATGGAGAGCATGAGTCGGGCTCCTCATATAGTGCAGATGAGGTCAGGGGTGAAGATGGGAGATGCTACTATGCAGGACTCTATACTGACCGATGGACTCACAGACGCCTTTTACAATTACCACATGGGAGTCACGGctgaGAACGTGGCCAAGCAGTGGGGGGTGTCCCGTGATGCTCAGGACCAGTTTGCCGTGACGTCACAGAACAGAACTGAAGCAGCTCAGAAGGCTGGACACTTTCACCAGGAGATTGTGCCAGTTACTGTTCCCTCTAGGAAAGGTCCAGTCGAGGTCAAAGCTGATGAGTTTCCACGGCATGGCAGTAATGTTGATGCTATGTCCAAGCTGAAGCCTTGTTTTGTGAAGGATGGTTCCGGTACAGTGACAGCTGGCAATGCATCCGGCATAAATGATGGAGCTGCAGCTACTGTTCTCATGAGCCAATCGGAGGCCCAGAGGCGGGGCTTAAAACCAATGGCACGCATCACAGCCTGGGCTCAGGCAGGCCTTGACCCTTCAGTCATGGGAACAGGGCCAATTCCAGCCATTAGAAAAGCTGTTGATAAAGCCGGATGGAAGCTGGATGAAGTTGATCTATTTGAGATAAATGAAGCTTTTGCTGCTCAGTCTATTGCAGTGGTAAAGGAGCTCGGTCTAAACCCTGCTAAGGTGAATGTGTGTGGAGGGGCAATCTCTCTCGGACATCCCCTCGGTATGTCCGGCTGTAGAGTGTTGGTGACCCTGCTTCATGCGCTTCAGAGGACAGGGGGACGAAAAGGGATCGCTTCATTGTGTATTGGAGGTGGAATGGGTATTGCCatgtgtgtagagagagaatAAATTAACTTCCACTGTAATCGTGTGCTTTTAATCAGGCCCTAAATCCGGTTCAAATCTAACCAGGCTATGAAGAGACTAAAGCAAGTACGTACTCAAGTCagaacttgtgtgtgtgtatatatatatatatatattgtaatggAAGGGAAATCCTTAGCAAAATGATCTAATGTATCattatatacagtgtatttGGGGCATTTTCACTTAACACTAATGTATTCCCTTCTGTATTTTGTGATTTACGGTACATAAAGAGGACGTATTGTATGCCGGCTGCTAAGACATTCCTTTTCTGTGTTAATTGTCTGTGGTTGCTGATTTACTCTTATAGTAGAGCTTTTATTGGTATTAAAACTGGCTCTGTCCACAAGCGTATCAACGATAACATGATTTATGAAAATCATGTTGTGTTTTAATCCAGTCGATCTGTTTCTAGCAGATTGCAAATTGGACCTAGTACTTAGATAAGACCTATCTACACTGTGCAATAGAAAACTGCCttagaaaatgtcaaatgtgCCAAAAAGGCAATATTAGCCTCTATCCCGTGCTTCCAATAGTCTGTAATAACAATTTCTCCCAATGTTAATTTGTACCTCAGGGGAAAAGCTGTTTACATATTTAGCCTGTGTTGTACTCTTTATCTTACTGCTTAATAAAGAATTTAATGGAGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups molecular_function

KEGG:

id description
K00626 ACAT, atoB; acetyl-CoA C-acetyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205179 lncRNA downstream 94170 16214344 ~ 16216716 (-) True G138960
TU205173 lncRNA downstream 102885 16207070 ~ 16208001 (-) True G138956
TU205116 lncRNA downstream 120227 15816920 ~ 16190659 (-) True G138922
TU205130 lncRNA downstream 317790 15992543 ~ 15993096 (-) False LOC122325494
TU205007 lncRNA downstream 599833 15684176 ~ 15711053 (-) True G138862
TU205207 lncRNA upstream 8683 16323406 ~ 16325753 (-) True G138983
TU205210 lncRNA upstream 9939 16324662 ~ 16325753 (-) False G138983
TU205285 lncRNA upstream 135803 16450526 ~ 16451893 (-) True G139029
TU205289 lncRNA upstream 140161 16454884 ~ 16455403 (-) True G139032
TU205435 lncRNA upstream 528495 16843218 ~ 16845168 (-) True G139139
XM_043218920.1 mRNA downstream 319 16302191 ~ 16310567 (-) True kif25
XM_043220576.1 mRNA downstream 8842 16299274 ~ 16302044 (-) True hebp2
XM_043220577.1 mRNA downstream 8844 16299274 ~ 16302042 (-) False hebp2
XM_043219004.1 mRNA downstream 192442 16113092 ~ 16118444 (-) True LOC122324509
XM_043219000.1 mRNA downstream 206159 16026759 ~ 16104727 (-) False LOC122324507
XM_043219400.1 mRNA upstream 295 16315018 ~ 16321419 (-) True LOC122324754
XM_043220534.1 mRNA upstream 32478 16347201 ~ 16366799 (-) True fndc1
XM_043219398.1 mRNA upstream 120498 16435221 ~ 16443831 (-) True hpcal1
XM_043219399.1 mRNA upstream 120498 16435221 ~ 16443829 (-) False hpcal1
XM_043219918.1 mRNA upstream 160628 16475351 ~ 16519770 (-) False usta
TU205141 other downstream 274633 16028253 ~ 16036253 (-) False LOC122324507
TU205127 other downstream 317790 15990874 ~ 15993096 (-) False LOC122325494
XR_006247359.1 other downstream 388934 15921733 ~ 15921952 (-) True LOC122325620
XR_006247353.1 other downstream 389885 15920781 ~ 15921001 (-) True LOC122325614
XR_006247357.1 other downstream 390385 15920281 ~ 15920501 (-) True LOC122325618
TU205229 other upstream 47408 16362131 ~ 16363312 (-) False fndc1
TU205232 other upstream 50087 16364810 ~ 16365467 (-) False fndc1
TU205233 other upstream 50087 16364810 ~ 16366772 (-) False fndc1
TU205287 other upstream 140745 16455468 ~ 16462216 (-) True G139030
TU205714 other upstream 1032083 17346806 ~ 17428071 (-) True erh

Expression Profile