RNA id: XM_043218622.1


Basic Information

Item Value
RNA id XM_043218622.1
length 1300
RNA type mRNA
GC content 0.57
exon number 4
gene id nrl
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 1902362 ~ 1907463 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTCTTCATCTCTGCCGCTGCCCTCTTTACCTCCAAGCCCTCTGGCCATGGAGTATCTCAACGACTTCGACCTGCTGAAGTTCGAAGTGAAGCCTGACacccctccacctcctccagcCTGCCTTTACCCCAAACCAGGCGTCCATCAGGAGACGGCCGGTTCTCCTtatgctcctcaccctcctccTGACTCCAGCCTCAGCTCCAGTCCCTACACCTCCCTTCCTCCGTCACCCACGCTAAGTGACGGACACCCGCCGCCATCTgcgtcctcctcttcctcctctctctcgtTCCCGCTCTCCATCTCCACCGGGTACATGTCAGGCCAGAGCTCCGGCTCTCAAGGAAACCTGGACGGGAGCCCAGAGGCCGGAGGCCCCACGCCGTGCTCAAACCCCACCTCTTTGGAGGACCTGCTGTGGTTGGCTGCATTGCAGCAGCAGTTCGGTGGGGAGCCCGGAGGAGCCGCGTCTCTGCTGGGAGCTCTTGGAGGAGTGCCGGACCGAGGGGACCGGGATCGAGGAGGGTTCCTGGGATGTGAAGATGCAGTGGAGGCCCTGCTGAACTCTGCTGCAGCCGCCGTAACTTCACAGTTCCCAGTTTTGTCGCAGAGTTCGAGCAGCAGTCACATGGGTGACTCCAGCAGCGACAGCGGTGTCGATGTTGTTCTTAACAAGTCGTCAGACATGTGTCACCGGCCTATACTGGTCGTTTCTTCCacccctccatctctctctaaTGTCAACACATCCACCAGTCCCTTCTCACAACCCCTCAGTCCACAGAGCCGCCTCCATCACCCACACCATCCAATGCAAGgccattatcatcatcatcatcatcatcatcatctgcaAGTCACTCAGTGCGGGATGGATGAGCGTTTTTCCGATGAGCAGTTGGTAAGTCTGTCAGTGCGAGAGCTGAACAGGCATTTGCGTGGGGTAAGCAAAGATGAGGTGGTCCGTTTGAAACAGAAAAGACGGACGCTGAAGAACCGCGGTTACGCCCAGTCCTGCCGTTACAAACGCCTCCAGCACCGGCACGCGCTCGAGTCCGAGAAACACATCCTCACACAGCAGCTGGAGCAGCTGCAGTGTGAGCTGTCCCGCGTGTTGAGAGAGCGAGACACGTACAAAGCTCGATACGAGAAGCTCATCAGTTCAACCGAGACTCAGCCTTCCCACCCCAACACCTCGCCTTCTCCTACTCCTCCGGATTACTTTTTGTGACAAAATGAACATTGTACAGACGAGAATTGAAGGAGAGCTGATTATTGTGATGGGTGAAAGTAAT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200155 lncRNA downstream 24240 1877914 ~ 1878122 (-) True G135480
TU200091 lncRNA downstream 149415 1752733 ~ 1752947 (-) True G135435
TU200090 lncRNA downstream 149906 1752156 ~ 1752456 (-) True G135434
TU200089 lncRNA downstream 152559 1749595 ~ 1749803 (-) True G135433
TU200086 lncRNA downstream 156706 1745359 ~ 1745656 (-) True G135430
TU200216 lncRNA upstream 98086 2005549 ~ 2013527 (-) True G135527
TU200237 lncRNA upstream 192533 2099996 ~ 2100241 (-) True G135542
TU200241 lncRNA upstream 451015 2358478 ~ 2358691 (-) True G135546
TU200345 lncRNA upstream 669669 2577132 ~ 2577488 (-) True G135627
TU200347 lncRNA upstream 671806 2579269 ~ 2579702 (-) True G135629
XM_043220164.1 mRNA downstream 5589 1879322 ~ 1896773 (-) False senp6a
XM_043220163.1 mRNA downstream 5589 1879322 ~ 1896773 (-) True senp6a
XM_043220165.1 mRNA downstream 10808 1879322 ~ 1891554 (-) False senp6a
XM_043219219.1 mRNA downstream 26070 1840128 ~ 1876292 (-) False myo6a
XM_043220216.1 mRNA upstream 27074 1934537 ~ 1965297 (-) False kcnk2b
XM_043220214.1 mRNA upstream 27074 1934537 ~ 1965295 (-) True kcnk2b
XM_043220215.1 mRNA upstream 29356 1936819 ~ 1965295 (-) False kcnk2b
XM_043218779.1 mRNA upstream 68861 1976324 ~ 1988216 (-) True smyd2b
XM_043218731.1 mRNA upstream 82022 1989485 ~ 1992179 (-) True si:dkey-121j17.6
XR_006247211.1 other downstream 26070 1854262 ~ 1876292 (-) False myo6a
TU200031 other downstream 241846 1655636 ~ 1660516 (-) False pnrc1
XR_006247187.1 other downstream 330663 1546489 ~ 1571699 (-) False pcmt
XR_006247188.1 other downstream 330664 1546487 ~ 1571698 (-) False pcmt
TU200217 other upstream 98086 2005549 ~ 2008962 (-) False G135527
XR_006247386.1 other upstream 112918 2020381 ~ 2020592 (-) True LOC122325649
XR_006247402.1 other upstream 114168 2021631 ~ 2021843 (-) True LOC122325666
XR_006247394.1 other upstream 115413 2022876 ~ 2023087 (-) True LOC122325658
XR_006247374.1 other upstream 116654 2024117 ~ 2024326 (-) True LOC122325636

Expression Profile